[med-svn] [Git][med-team/sra-sdk][upstream] New upstream version 3.2.1+dfsg
Aaron M. Ucko (@ucko)
gitlab at salsa.debian.org
Wed Apr 9 03:04:20 BST 2025
Aaron M. Ucko pushed to branch upstream at Debian Med / sra-sdk
Commits:
c6a3fefa by Aaron M. Ucko at 2025-04-02T21:09:42-04:00
New upstream version 3.2.1+dfsg
- - - - -
747 changed files:
- CHANGES.md
- Makefile
- README.md
- build/Makefile.env
- build/Makefile.vers
- + build/docker/Dockerfile.build_with_loaders-alpine
- build/docker/Makefile
- + build/docker/build-and-test-debian-12.sh
- build/env.cmake
- libs/CMakeLists.txt
- libs/ascp/linux/ascp-path.c
- libs/general-writer/CMakeLists.txt
- libs/general-writer/general-writer.cpp
- libs/general-writer/gw-dumper.cpp
- + libs/general-writer/test/.gitignore
- libs/general-writer/test/CMakeLists.txt
- + libs/general-writer/test/expected/test-general-writer.stdout
- libs/general-writer/test/test-general-writer.cpp
- tools/test-tools/qa-stats/output.hpp → libs/inc/JSON_ostream.hpp
- + libs/inc/fingerprint.hpp
- libs/inc/general-writer/general-writer.h
- libs/inc/general-writer/general-writer.hpp
- + libs/inc/hashing.hpp
- + libs/inc/kfile_stream/kfile_interface.hpp
- + libs/inc/kfile_stream/kfile_stream.hpp
- + libs/inc/schema/transform-functions.h
- + libs/inc/search/extern.h
- + libs/inc/search/grep.h
- + libs/inc/search/nucstrstr.h
- + libs/inc/search/ref-variation.h
- tools/loaders/general-loader/test/test-gw-dumper.cpp → libs/inc/search/smith-waterman.h
- tools/loaders/bam-loader/spdlog/async.h → libs/inc/spdlog/async.h
- tools/loaders/bam-loader/spdlog/async_logger-inl.h → libs/inc/spdlog/async_logger-inl.h
- tools/loaders/sharq/spdlog/async_logger.h → libs/inc/spdlog/async_logger.h
- tools/loaders/sharq/spdlog/cfg/argv.h → libs/inc/spdlog/cfg/argv.h
- tools/loaders/sharq/spdlog/cfg/env.h → libs/inc/spdlog/cfg/env.h
- tools/loaders/sharq/spdlog/cfg/helpers-inl.h → libs/inc/spdlog/cfg/helpers-inl.h
- tools/loaders/sharq/spdlog/cfg/helpers.h → libs/inc/spdlog/cfg/helpers.h
- tools/loaders/bam-loader/spdlog/common-inl.h → libs/inc/spdlog/common-inl.h
- tools/loaders/bam-loader/spdlog/common.h → libs/inc/spdlog/common.h
- tools/loaders/sharq/spdlog/details/backtracer-inl.h → libs/inc/spdlog/details/backtracer-inl.h
- tools/loaders/sharq/spdlog/details/backtracer.h → libs/inc/spdlog/details/backtracer.h
- tools/loaders/sharq/spdlog/details/circular_q.h → libs/inc/spdlog/details/circular_q.h
- tools/loaders/sharq/spdlog/details/console_globals.h → libs/inc/spdlog/details/console_globals.h
- tools/loaders/bam-loader/spdlog/details/file_helper-inl.h → libs/inc/spdlog/details/file_helper-inl.h
- tools/loaders/bam-loader/spdlog/details/file_helper.h → libs/inc/spdlog/details/file_helper.h
- tools/loaders/bam-loader/spdlog/details/fmt_helper.h → libs/inc/spdlog/details/fmt_helper.h
- tools/loaders/sharq/spdlog/details/log_msg-inl.h → libs/inc/spdlog/details/log_msg-inl.h
- tools/loaders/sharq/spdlog/details/log_msg.h → libs/inc/spdlog/details/log_msg.h
- tools/loaders/sharq/spdlog/details/log_msg_buffer-inl.h → libs/inc/spdlog/details/log_msg_buffer-inl.h
- tools/loaders/sharq/spdlog/details/log_msg_buffer.h → libs/inc/spdlog/details/log_msg_buffer.h
- tools/loaders/bam-loader/spdlog/details/mpmc_blocking_q.h → libs/inc/spdlog/details/mpmc_blocking_q.h
- tools/loaders/bam-loader/spdlog/details/null_mutex.h → libs/inc/spdlog/details/null_mutex.h
- tools/loaders/bam-loader/spdlog/details/os-inl.h → libs/inc/spdlog/details/os-inl.h
- tools/loaders/bam-loader/spdlog/details/os.h → libs/inc/spdlog/details/os.h
- tools/loaders/sharq/spdlog/details/periodic_worker-inl.h → libs/inc/spdlog/details/periodic_worker-inl.h
- tools/loaders/sharq/spdlog/details/periodic_worker.h → libs/inc/spdlog/details/periodic_worker.h
- tools/loaders/sharq/spdlog/details/registry-inl.h → libs/inc/spdlog/details/registry-inl.h
- tools/loaders/bam-loader/spdlog/details/registry.h → libs/inc/spdlog/details/registry.h
- tools/loaders/sharq/spdlog/details/synchronous_factory.h → libs/inc/spdlog/details/synchronous_factory.h
- tools/loaders/bam-loader/spdlog/details/tcp_client-windows.h → libs/inc/spdlog/details/tcp_client-windows.h
- tools/loaders/bam-loader/spdlog/details/tcp_client.h → libs/inc/spdlog/details/tcp_client.h
- tools/loaders/bam-loader/spdlog/details/thread_pool-inl.h → libs/inc/spdlog/details/thread_pool-inl.h
- tools/loaders/bam-loader/spdlog/details/thread_pool.h → libs/inc/spdlog/details/thread_pool.h
- tools/loaders/bam-loader/spdlog/details/udp_client-windows.h → libs/inc/spdlog/details/udp_client-windows.h
- tools/loaders/bam-loader/spdlog/details/udp_client.h → libs/inc/spdlog/details/udp_client.h
- tools/loaders/sharq/spdlog/details/windows_include.h → libs/inc/spdlog/details/windows_include.h
- tools/loaders/bam-loader/spdlog/fmt/bin_to_hex.h → libs/inc/spdlog/fmt/bin_to_hex.h
- tools/loaders/sharq/spdlog/fmt/bundled/args.h → libs/inc/spdlog/fmt/bundled/args.h
- tools/loaders/bam-loader/spdlog/fmt/bundled/chrono.h → libs/inc/spdlog/fmt/bundled/chrono.h
- tools/loaders/bam-loader/spdlog/fmt/bundled/color.h → libs/inc/spdlog/fmt/bundled/color.h
- tools/loaders/sharq/spdlog/fmt/bundled/compile.h → libs/inc/spdlog/fmt/bundled/compile.h
- tools/loaders/sharq/spdlog/fmt/bundled/core.h → libs/inc/spdlog/fmt/bundled/core.h
- tools/loaders/bam-loader/spdlog/fmt/bundled/fmt.license.rst → libs/inc/spdlog/fmt/bundled/fmt.license.rst
- tools/loaders/sharq/spdlog/fmt/bundled/format-inl.h → libs/inc/spdlog/fmt/bundled/format-inl.h
- tools/loaders/bam-loader/spdlog/fmt/bundled/format.h → libs/inc/spdlog/fmt/bundled/format.h
- tools/loaders/sharq/spdlog/fmt/bundled/locale.h → libs/inc/spdlog/fmt/bundled/locale.h
- tools/loaders/bam-loader/spdlog/fmt/bundled/os.h → libs/inc/spdlog/fmt/bundled/os.h
- + libs/inc/spdlog/fmt/bundled/ostream.h
- tools/loaders/bam-loader/spdlog/fmt/bundled/printf.h → libs/inc/spdlog/fmt/bundled/printf.h
- tools/loaders/sharq/spdlog/fmt/bundled/ranges.h → libs/inc/spdlog/fmt/bundled/ranges.h
- + libs/inc/spdlog/fmt/bundled/std.h
- tools/loaders/bam-loader/spdlog/fmt/bundled/xchar.h → libs/inc/spdlog/fmt/bundled/xchar.h
- tools/loaders/bam-loader/spdlog/fmt/chrono.h → libs/inc/spdlog/fmt/chrono.h
- tools/loaders/bam-loader/spdlog/fmt/compile.h → libs/inc/spdlog/fmt/compile.h
- tools/loaders/bam-loader/spdlog/fmt/fmt.h → libs/inc/spdlog/fmt/fmt.h
- tools/loaders/bam-loader/spdlog/fmt/ostr.h → libs/inc/spdlog/fmt/ostr.h
- tools/loaders/sharq/spdlog/fmt/ostr.h → libs/inc/spdlog/fmt/ranges.h
- + libs/inc/spdlog/fmt/std.h
- tools/loaders/bam-loader/spdlog/fmt/xchar.h → libs/inc/spdlog/fmt/xchar.h
- tools/loaders/sharq/spdlog/formatter.h → libs/inc/spdlog/formatter.h
- tools/loaders/bam-loader/spdlog/fwd.h → libs/inc/spdlog/fwd.h
- tools/loaders/bam-loader/spdlog/logger-inl.h → libs/inc/spdlog/logger-inl.h
- tools/loaders/bam-loader/spdlog/logger.h → libs/inc/spdlog/logger.h
- tools/loaders/bam-loader/spdlog/pattern_formatter-inl.h → libs/inc/spdlog/pattern_formatter-inl.h
- tools/loaders/sharq/spdlog/pattern_formatter.h → libs/inc/spdlog/pattern_formatter.h
- tools/loaders/sharq/spdlog/sinks/android_sink.h → libs/inc/spdlog/sinks/android_sink.h
- tools/loaders/sharq/spdlog/sinks/ansicolor_sink-inl.h → libs/inc/spdlog/sinks/ansicolor_sink-inl.h
- tools/loaders/sharq/spdlog/sinks/ansicolor_sink.h → libs/inc/spdlog/sinks/ansicolor_sink.h
- tools/loaders/sharq/spdlog/sinks/base_sink-inl.h → libs/inc/spdlog/sinks/base_sink-inl.h
- tools/loaders/bam-loader/spdlog/sinks/base_sink.h → libs/inc/spdlog/sinks/base_sink.h
- tools/loaders/bam-loader/spdlog/sinks/basic_file_sink-inl.h → libs/inc/spdlog/sinks/basic_file_sink-inl.h
- tools/loaders/bam-loader/spdlog/sinks/basic_file_sink.h → libs/inc/spdlog/sinks/basic_file_sink.h
- tools/loaders/sharq/spdlog/sinks/basic_file_sink.h → libs/inc/spdlog/sinks/callback_sink.h
- tools/loaders/bam-loader/spdlog/sinks/daily_file_sink.h → libs/inc/spdlog/sinks/daily_file_sink.h
- tools/loaders/sharq/spdlog/sinks/dist_sink.h → libs/inc/spdlog/sinks/dist_sink.h
- tools/loaders/bam-loader/spdlog/sinks/dup_filter_sink.h → libs/inc/spdlog/sinks/dup_filter_sink.h
- tools/loaders/bam-loader/spdlog/sinks/hourly_file_sink.h → libs/inc/spdlog/sinks/hourly_file_sink.h
- + libs/inc/spdlog/sinks/kafka_sink.h
- tools/loaders/bam-loader/spdlog/sinks/mongo_sink.h → libs/inc/spdlog/sinks/mongo_sink.h
- tools/loaders/bam-loader/spdlog/sinks/msvc_sink.h → libs/inc/spdlog/sinks/msvc_sink.h
- tools/loaders/sharq/spdlog/sinks/null_sink.h → libs/inc/spdlog/sinks/null_sink.h
- tools/loaders/sharq/spdlog/sinks/ostream_sink.h → libs/inc/spdlog/sinks/ostream_sink.h
- tools/loaders/bam-loader/spdlog/sinks/qt_sinks.h → libs/inc/spdlog/sinks/qt_sinks.h
- tools/loaders/sharq/spdlog/sinks/ringbuffer_sink.h → libs/inc/spdlog/sinks/ringbuffer_sink.h
- tools/loaders/bam-loader/spdlog/sinks/rotating_file_sink-inl.h → libs/inc/spdlog/sinks/rotating_file_sink-inl.h
- tools/loaders/bam-loader/spdlog/sinks/rotating_file_sink.h → libs/inc/spdlog/sinks/rotating_file_sink.h
- tools/loaders/sharq/spdlog/sinks/sink-inl.h → libs/inc/spdlog/sinks/sink-inl.h
- tools/loaders/sharq/spdlog/sinks/sink.h → libs/inc/spdlog/sinks/sink.h
- tools/loaders/sharq/spdlog/sinks/stdout_color_sinks-inl.h → libs/inc/spdlog/sinks/stdout_color_sinks-inl.h
- tools/loaders/sharq/spdlog/sinks/stdout_color_sinks.h → libs/inc/spdlog/sinks/stdout_color_sinks.h
- tools/loaders/bam-loader/spdlog/sinks/stdout_sinks-inl.h → libs/inc/spdlog/sinks/stdout_sinks-inl.h
- tools/loaders/sharq/spdlog/sinks/stdout_sinks.h → libs/inc/spdlog/sinks/stdout_sinks.h
- tools/loaders/sharq/spdlog/sinks/syslog_sink.h → libs/inc/spdlog/sinks/syslog_sink.h
- tools/loaders/sharq/spdlog/sinks/systemd_sink.h → libs/inc/spdlog/sinks/systemd_sink.h
- tools/loaders/sharq/spdlog/sinks/tcp_sink.h → libs/inc/spdlog/sinks/tcp_sink.h
- tools/loaders/bam-loader/spdlog/sinks/udp_sink.h → libs/inc/spdlog/sinks/udp_sink.h
- tools/loaders/bam-loader/spdlog/sinks/win_eventlog_sink.h → libs/inc/spdlog/sinks/win_eventlog_sink.h
- tools/loaders/sharq/spdlog/sinks/wincolor_sink-inl.h → libs/inc/spdlog/sinks/wincolor_sink-inl.h
- tools/loaders/sharq/spdlog/sinks/wincolor_sink.h → libs/inc/spdlog/sinks/wincolor_sink.h
- tools/loaders/bam-loader/spdlog/spdlog-inl.h → libs/inc/spdlog/spdlog-inl.h
- tools/loaders/bam-loader/spdlog/spdlog.h → libs/inc/spdlog/spdlog.h
- tools/loaders/bam-loader/spdlog/stopwatch.h → libs/inc/spdlog/stopwatch.h
- tools/loaders/bam-loader/spdlog/tweakme.h → libs/inc/spdlog/tweakme.h
- tools/loaders/bam-loader/spdlog/version.h → libs/inc/spdlog/version.h
- + libs/inc/update-spdlog.sh
- libs/inc/vdb.hpp
- + libs/schema/CMakeLists.txt
- + libs/schema/Makefile
- + libs/schema/SraSchema.cpp
- + libs/schema/align/align.vschema
- + libs/schema/align/mate-cache.vschema
- + libs/schema/align/pileup-stats.vschema
- + libs/schema/align/qstat.vschema
- + libs/schema/align/refseq.vschema
- + libs/schema/align/seq.vschema
- + libs/schema/insdc/insdc.vschema
- + libs/schema/insdc/seq.vschema
- + libs/schema/insdc/sra.vschema
- + libs/schema/ncbi/clip.vschema
- + libs/schema/ncbi/ncbi.vschema
- + libs/schema/ncbi/pnbrdb.vschema
- + libs/schema/ncbi/seq-graph.vschema
- + libs/schema/ncbi/seq.vschema
- + libs/schema/ncbi/spotname.vschema
- + libs/schema/ncbi/sra.vschema
- + libs/schema/ncbi/stats.vschema
- + libs/schema/ncbi/trace.vschema
- + libs/schema/ncbi/varloc.vschema
- + libs/schema/ncbi/wgs-contig.vschema
- + libs/schema/sra/454.vschema
- + libs/schema/sra/abi.vschema
- + libs/schema/sra/generic-fastq.vschema
- + libs/schema/sra/helicos.vschema
- + libs/schema/sra/illumina.vschema
- + libs/schema/sra/ion-torrent.vschema
- + libs/schema/sra/nanopore.vschema
- + libs/schema/sra/pacbio.vschema
- + libs/schema/sra/pevents.vschema
- + libs/schema/sraxf/dynamic-454-read-descriptor.c
- + libs/search/.gitignore
- + libs/search/CMakeLists.txt
- + libs/search/Makefile
- + libs/search/agrep-dp.c
- + libs/search/agrep-myers.c
- + libs/search/agrep-myersunltd.c
- + libs/search/agrep-wumanber.c
- + libs/search/debug.h
- + libs/search/fgrep-aho.c
- + libs/search/fgrep-boyermoore.c
- + libs/search/fgrep-dumb.c
- + libs/search/nucstrstr.c
- + libs/search/search-priv.h
- + libs/search/search.c
- + libs/search/sw-search.c
- ngs/CHANGES.md
- ngs/ncbi/ngs-c++/CMakeLists.txt
- ngs/ncbi/ngs-jni/CMakeLists.txt
- ngs/ncbi/ngs/CMakeLists.txt
- ngs/ncbi/ngs/NGS_FragmentBlob.c
- ngs/ncbi/ngs/NGS_ReferenceBlob.c
- ngs/ncbi/ngs/VByteBlob.c
- ngs/ngs-bam/Makefile.vers
- ngs/ngs-java/CMakeLists.txt
- ngs/ngs-java/Makefile.vers
- ngs/ngs-java/examples/CMakeLists.txt
- ngs/ngs-java/gov/nih/nlm/ncbi/ngs/LibDependencies.java
- ngs/ngs-java/gov/nih/nlm/ncbi/ngs/Makefile
- ngs/ngs-python/Makefile.vers
- ngs/ngs-python/examples/CMakeLists.txt
- ngs/ngs-sdk/Makefile.vers
- ngs/ngs-sdk/dispatch/version.h
- ngs/ngs-sdk/examples/run_and_diff.sh
- + shared/python/GeneralWriter.py
- + shared/python/README.md
- shared/toolkit.vers
- shared/toolkit.vers.h
- test/CMakeLists.txt
- test/Makefile
- test/external/align-info/CMakeLists.txt
- + test/external/align-info/test-refseq-404.sh
- test/external/driver-tool/CMakeLists.txt
- test/external/driver-tool/expected/NO_SDL.stderr
- + test/external/driver-tool/expected/bitmap.stderr
- test/external/driver-tool/expected/vdbcache.stderr
- test/external/driver-tool/test-json-parse.cpp
- + test/external/driver-tool/test-opt-bitmap-Debug.sh
- + test/external/driver-tool/test-opt-bitmap.sh
- test/external/fasterq-dump/CMakeLists.txt
- + test/external/fasterq-dump/simple_test.sh
- + test/external/fasterq-dump/slowtest-fasterq-dump-dot-in-output-path.sh
- test/external/fasterq-dump/test_for_read_id_cSRA.sh
- test/external/fasterq-dump/test_for_read_id_flat.sh
- test/external/kdbmeta/CMakeLists.txt
- test/external/ngs-pileup/CMakeLists.txt
- test/external/ngs/testy-the-bear/runtestcase.sh
- test/external/prefetch/CMakeLists.txt
- + test/external/prefetch/data/bad-kart.krt
- + test/external/prefetch/expected/err
- + test/external/prefetch/expected/out
- test/external/prefetch/runtests.sh
- + test/external/prefetch/test-bad-kart.sh
- test/external/prefetch/urls_and_accs.pl
- test/external/sam-dump/CMakeLists.txt
- test/external/sra-info/CMakeLists.txt
- test/external/sra-info/expected/1.2.stdout
- + test/external/sra-info/expected/11.0-alt.stdout
- + test/external/sra-info/expected/11.0.stdout
- + test/external/sra-info/expected/11.1-alt.stdout
- + test/external/sra-info/expected/11.1.stdout
- + test/external/sra-info/expected/11.2-alt.stdout
- + test/external/sra-info/expected/11.2.stdout
- + test/external/sra-info/expected/12.0-alt.stdout
- + test/external/sra-info/expected/12.0.stdout
- + test/external/sra-info/expected/12.1-alt.stdout
- + test/external/sra-info/expected/12.1.stdout
- + test/external/sra-info/expected/12.2-alt.stdout
- + test/external/sra-info/expected/12.2.stdout
- + test/external/sra-info/expected/12.3-alt.stdout
- + test/external/sra-info/expected/12.3.stdout
- + test/external/sra-info/expected/12.4-alt.stdout
- + test/external/sra-info/expected/12.4.stdout
- + test/external/sra-info/expected/12.5-alt.stdout
- + test/external/sra-info/expected/12.5.stdout
- test/external/sra-info/expected/2.0.stdout
- + test/external/sra-info/expected/4.0.stdout
- test/external/sra-info/expected/6.2.stdout
- + test/external/sra-info/expected/6.3-alt.stdout
- + test/external/sra-info/expected/6.3.stdout
- test/external/sra-info/runtestcase.sh
- test/external/sra-info/test-sra-info.cpp
- test/external/sra-pileup/CMakeLists.txt
- test/external/sra-pileup/runtests-slow.sh
- test/external/sra-stat/CMakeLists.txt
- test/external/sra-stat/expected/SRR053325-meta
- test/external/sra-stat/expected/SRR19599626-meta
- test/external/sra-stat/test-sra-stat-local.sh
- test/external/sra-stat/test-sra-stat-slow.sh
- test/external/sra-stat/test-sra-stat-unaligned-bam.sh
- test/external/srapath/CMakeLists.txt
- test/external/srapath/test-srapath.sh
- test/external/vdb-config/test-vdb-config.pl
- test/external/vdb-dump/CMakeLists.txt
- test/external/vdb-dump/expected/7.0.stdout
- test/external/vdb-dump/vdb_dump.sh
- test/external/vdb-validate/CMakeLists.txt
- test/external/vdb-validate/expected/CONSISTENCY
- + test/external/vdb-validate/expected/CONSISTENCY_and_CRC
- test/external/vdb-validate/expected/READ_LEN
- test/external/vdb-validate/expected/ROW_GAP
- + test/external/vdb-validate/expected/no_crc
- test/external/vdb-validate/expected/no_sdc_checks
- test/external/vdb-validate/expected/sdc_len_mismatch_1
- test/external/vdb-validate/expected/sdc_len_mismatch_2
- test/external/vdb-validate/expected/sdc_pa_longer_1
- test/external/vdb-validate/expected/sdc_pa_longer_2
- test/external/vdb-validate/expected/sdc_pa_longer_3
- test/external/vdb-validate/expected/sdc_seq_cmp_read_len_corrupt
- test/external/vdb-validate/expected/sdc_seq_cmp_read_len_fixed
- test/external/vdb-validate/expected/sdc_tmp_mismatch
- test/external/vdb-validate/generate-test-data-with-unredacted-reads.py
- test/external/vdb-validate/runtestcase.sh
- test/external/vdb-validate/vdb_validate.sh
- test/external/vdb-validate/vdb_validate_redact.sh
- test/internal/align-cache/CMakeLists.txt
- test/internal/align-cache/runtest.sh
- test/internal/copycat/CMakeLists.txt
- test/internal/make-read-filter/CMakeLists.txt
- test/internal/read-filter-redact/CMakeLists.txt
- test/internal/test_sanitizers/CMakeLists.txt
- test/internal/vdb-copy/CMakeLists.txt
- test/internal/vdb-copy/redact-test/generate-test-data.py
- test/internal/vdb-copy/test-redaction.sh
- test/internal/vdb-diff/CMakeLists.txt
- + test/libs/CMakeLists.txt
- + test/libs/Makefile
- + test/libs/kfile_stream/CMakeLists.txt
- + test/libs/kfile_stream/Makefile
- + test/libs/kfile_stream/custom_stream.cpp
- test/loaders/CMakeLists.txt
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- + tools/test-tools/rnd2sra/src/bio_or_tech.hpp
- + tools/test-tools/rnd2sra/src/csra_prim_cols.hpp
- + tools/test-tools/rnd2sra/src/csra_read.hpp
- + tools/test-tools/rnd2sra/src/csra_seq_cols.hpp
- + tools/test-tools/rnd2sra/src/csra_seq_rec.hpp
- + tools/test-tools/rnd2sra/src/csra_spot.hpp
- + tools/test-tools/rnd2sra/src/csra_spot_list.hpp
- + tools/test-tools/rnd2sra/src/fwd_or_rev.hpp
- + tools/test-tools/rnd2sra/src/main_params.hpp
- + tools/test-tools/rnd2sra/src/normalizer.hpp
- + tools/test-tools/rnd2sra/src/product.hpp
- + tools/test-tools/rnd2sra/src/rnd2sra.cpp
- + tools/test-tools/rnd2sra/src/rnd2sra_ini.hpp
- + tools/test-tools/rnd2sra/src/rnd2sra_main.hpp
- + tools/test-tools/rnd2sra/src/rnd_cmn.hpp
- + tools/test-tools/rnd2sra/src/rnd_csra.hpp
- + tools/test-tools/rnd2sra/src/rnd_none_csra.hpp
- + tools/test-tools/rnd2sra/src/run.sh
- + tools/test-tools/rnd2sra/src/runner.hpp
- + tools/test-tools/rnd2sra/src/runner_ini.hpp
- + tools/test-tools/rnd2sra/util/batch.hpp
- + tools/test-tools/rnd2sra/util/errors.hpp
- + tools/test-tools/rnd2sra/util/exec.hpp
- + tools/test-tools/rnd2sra/util/fd_reader.hpp
- + tools/test-tools/rnd2sra/util/file_deleter.hpp
- + tools/test-tools/rnd2sra/util/file_diff.hpp
- + tools/test-tools/rnd2sra/util/file_rename.hpp
- + tools/test-tools/rnd2sra/util/file_report.hpp
- + tools/test-tools/rnd2sra/util/file_tool.hpp
- + tools/test-tools/rnd2sra/util/ini.hpp
- + tools/test-tools/rnd2sra/util/log.hpp
- + tools/test-tools/rnd2sra/util/process.hpp
- + tools/test-tools/rnd2sra/util/random_toolbox.hpp
- + tools/test-tools/rnd2sra/util/str_tools.hpp
- + tools/test-tools/rnd2sra/util/values.hpp
- + tools/test-tools/rnd2sra/vdb/KConfig.hpp
- + tools/test-tools/rnd2sra/vdb/KDir.hpp
- + tools/test-tools/rnd2sra/vdb/MetaData.hpp
- + tools/test-tools/rnd2sra/vdb/NameList.hpp
- + tools/test-tools/rnd2sra/vdb/Resolver.hpp
- + tools/test-tools/rnd2sra/vdb/RowRange.hpp
- + tools/test-tools/rnd2sra/vdb/VCursor.hpp
- + tools/test-tools/rnd2sra/vdb/VFS.hpp
- + tools/test-tools/rnd2sra/vdb/VSchema.hpp
- + tools/test-tools/rnd2sra/vdb/VdbColumn.hpp
- + tools/test-tools/rnd2sra/vdb/VdbDatabase.hpp
- + tools/test-tools/rnd2sra/vdb/VdbMgr.hpp
- + tools/test-tools/rnd2sra/vdb/VdbObj.hpp
- + tools/test-tools/rnd2sra/vdb/VdbProc.hpp
- + tools/test-tools/rnd2sra/vdb/VdbString.hpp
- + tools/test-tools/rnd2sra/vdb/VdbTable.hpp
- + tools/test-tools/rnd2sra/vdb/checksum.hpp
- + tools/test-tools/rnd2sra/vdb/kapp.hpp
- + tools/test-tools/rnd2sra/vdb/vdb.hpp
- + tools/test-tools/rnd2sra/vdb/wvdb.hpp
- tools/test-tools/sam-analyze/args.hpp
The diff was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/sra-sdk/-/commit/c6a3fefad7f327dfc8759be316c5d7f51558d14e
--
View it on GitLab: https://salsa.debian.org/med-team/sra-sdk/-/commit/c6a3fefad7f327dfc8759be316c5d7f51558d14e
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