[med-svn] [Git][med-team/phyml][master] 7 commits: Restrict to 64 bit architectures only by Build-Depending architecture-is-64-bit Closes: #1106652

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / phyml


Commits:
62211745 by Andreas Tille at 2025-12-06T21:12:39+01:00
Restrict to 64 bit architectures only by Build-Depending architecture-is-64-bit Closes: #1106652

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7e5cf91a by Andreas Tille at 2025-12-06T21:15:01+01:00
d/watch: version=5

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a841b84f by Andreas Tille at 2025-12-06T21:15:25+01:00
New upstream version 3.3.20250515
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8ff80e15 by Andreas Tille at 2025-12-06T21:15:25+01:00
New upstream version

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f089d897 by Andreas Tille at 2025-12-06T21:15:30+01:00
Update upstream source from tag 'upstream/3.3.20250515'

Update to upstream version '3.3.20250515'
with Debian dir e4989ce0aad48d13ffce2ef86db9741d3f270936
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887f1325 by Andreas Tille at 2025-12-06T21:15:31+01:00
Standards-Version: 4.7.2 (routine-update)

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f91228c8 by Andreas Tille at 2025-12-06T22:30:14+01:00
Refresh patches

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130 changed files:

- + .github/FUNDING.yml
- + .github/workflows/ci.yaml
- .gitignore
- + Makefile
- Makefile.am
- autogen.sh
- + config.h
- + config.log
- + config.status
- configure.ac
- debian/changelog
- debian/control
- debian/patches/apply-cflags.patch
- debian/patches/apply-ldflags.patch
- debian/patches/filter-sse3-intrinsics.patch
- debian/patches/fix_declaration_of_temp.patch
- debian/patches/fix_wrong_initialisation_of_array.patch
- debian/patches/no-configure-ac-date.patch
- debian/patches/no-march-native.patch
- debian/patches/sse_only_if_supported.patch
- debian/patches/typos.patch
- debian/watch
- + doc/Makefile
- doc/Makefile.am
- doc/fig/phyrexlog.pdf
- doc/naturemag.bst
- + doc/phyml-manual.aux
- + doc/phyml-manual.bbl
- + doc/phyml-manual.blg
- + doc/phyml-manual.fls
- + doc/phyml-manual.idx
- + doc/phyml-manual.ilg
- + doc/phyml-manual.ind
- + doc/phyml-manual.log
- doc/phyml-manual.pdf
- doc/phyml-manual.tex
- + doc/phyml-manual.toc
- doc/ref.bib
- examples/lg4x/X1.mat
- examples/lg4x/X2.mat
- examples/lg4x/X3.mat
- examples/lg4x/X4.mat
- examples/lg4x/lg4x.xml
- examples/nexus_example.nxs
- examples/nucleic
- examples/phyrex/h1n1.nxs
- examples/phyrex/usa_coord.txt
- examples/proteic
- + src/Makefile
- src/Makefile.am
- − src/Makefile_mc.am
- − src/Makefile_r.am
- src/alrt.c
- src/ancestral.c
- src/avx.c
- src/beagle_utils.c
- src/cl.c
- + src/cv.c
- + src/cv.h
- src/date.c
- src/draw.c
- src/draw.h
- + src/evolve.c
- + src/evolve.h
- src/free.c
- src/free.h
- src/geo.c
- src/help.c
- src/help.h
- + src/ibm.c
- + src/ibm.h
- src/init.c
- src/init.h
- src/interface.c
- src/interface.h
- src/invitee.c
- src/io.c
- src/io.h
- + src/iou.c
- + src/iou.h
- + src/iwn.c
- + src/iwn.h
- src/lk.c
- src/lk.h
- src/location.c
- src/location.h
- src/m4.c
- src/m4.h
- src/main.c
- src/make.c
- src/make.h
- src/mcmc.c
- src/mcmc.h
- src/mixt.c
- src/mixt.h
- src/models.c
- src/models.h
- src/mpi_boot.c
- src/nexus.c
- src/nexus.h
- src/optimiz.c
- src/optimiz.h
- + src/p1.nxs
- src/pars.c
- src/phyrex.c
- src/phyrex.h
- src/rates.c
- src/rates.h
- src/rrw.c
- src/rrw.h
- src/rw.c
- src/rw.h
- src/simu.c
- src/slfv.c
- src/slfv.h
- src/spr.c
- src/sse.c
- src/sse.h
- + src/sse2neon.h
- src/stats.c
- src/stats.h
- src/times.c
- src/times.h
- src/utilities.c
- src/utilities.h
- + src/velocity.c
- + src/velocity.h
- src/xml.c
- src/xml.h
- + stamp-h1


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/phyml/-/compare/cce462bb3bfc7bb72ff92ab4d04b4fc733a76656...f91228c858d63e3f7d6979c92f9dea61d0a8432e

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View it on GitLab: https://salsa.debian.org/med-team/phyml/-/compare/cce462bb3bfc7bb72ff92ab4d04b4fc733a76656...f91228c858d63e3f7d6979c92f9dea61d0a8432e
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