[med-svn] [Git][med-team/python-cogent][master] 4 commits: New upstream version 2024.12.19a2+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / python-cogent


Commits:
db5d49b7 by Andreas Tille at 2025-02-15T15:04:42+01:00
New upstream version 2024.12.19a2+dfsg
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f2ab90e1 by Andreas Tille at 2025-02-15T15:04:42+01:00
New upstream version

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9404790e by Andreas Tille at 2025-02-15T15:04:59+01:00
Update upstream source from tag 'upstream/2024.12.19a2+dfsg'

Update to upstream version '2024.12.19a2+dfsg'
with Debian dir 8d0c4e7558e981a56a77bedc412d80b8e983434a
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1142ba5a by Andreas Tille at 2025-02-15T17:39:56+01:00
Update patches

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30 changed files:

- .github/workflows/linters.yml
- .github/workflows/release.yml
- .github/workflows/testing_develop.yml
- README.md
- changelog.md
- debian/changelog
- debian/patches/ignore_tests_accessing_network.patch
- debian/patches/remove-jupyter-sphinx.patch
- debian/patches/skip-parallel-tests-on-single-cpu-systems.patch
- doc/conf.py
- doc/cookbook/annotation_db.rst
- doc/cookbook/features.rst
- doc/doctest_rsts.py
- doc/examples/demo-mpi-parallel.py
- doc/examples/parallel.rst
- doc/install.rst
- doc/rst2script.py
- noxfile.py
- pyproject.toml
- requirements.txt
- src/cogent3/__init__.py
- src/cogent3/_version.py
- src/cogent3/align/align.py
- src/cogent3/align/dp_calculation.py
- src/cogent3/align/indel_model.py
- src/cogent3/align/indel_positions.py
- src/cogent3/align/pairwise.py
- src/cogent3/align/pairwise_pogs_numba.py
- src/cogent3/align/pairwise_seqs_numba.py
- src/cogent3/align/progressive.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-cogent/-/compare/45a4188f5811ed5dec3ba64b4b445171987b87d0...1142ba5ae2b4e27eef63bde743070ab778d090f0

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View it on GitLab: https://salsa.debian.org/med-team/python-cogent/-/compare/45a4188f5811ed5dec3ba64b4b445171987b87d0...1142ba5ae2b4e27eef63bde743070ab778d090f0
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