[med-svn] [Git][med-team/python-cogent][upstream] New upstream version 2024.12.19a2+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / python-cogent


Commits:
db5d49b7 by Andreas Tille at 2025-02-15T15:04:42+01:00
New upstream version 2024.12.19a2+dfsg
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30 changed files:

- .github/workflows/linters.yml
- .github/workflows/release.yml
- .github/workflows/testing_develop.yml
- README.md
- changelog.md
- doc/conf.py
- doc/cookbook/annotation_db.rst
- doc/cookbook/features.rst
- doc/doctest_rsts.py
- doc/examples/demo-mpi-parallel.py
- doc/examples/parallel.rst
- doc/install.rst
- doc/rst2script.py
- noxfile.py
- pyproject.toml
- requirements.txt
- src/cogent3/__init__.py
- src/cogent3/_version.py
- src/cogent3/align/align.py
- src/cogent3/align/dp_calculation.py
- src/cogent3/align/indel_model.py
- src/cogent3/align/indel_positions.py
- src/cogent3/align/pairwise.py
- src/cogent3/align/pairwise_pogs_numba.py
- src/cogent3/align/pairwise_seqs_numba.py
- src/cogent3/align/progressive.py
- src/cogent3/align/pycompare.py
- src/cogent3/align/traceback.py
- src/cogent3/app/__init__.py
- src/cogent3/app/align.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-cogent/-/commit/db5d49b73af97cf423c39c17a075822c78ea4ca3

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