[med-svn] [Git][med-team/canu][upstream] New upstream version 2.3+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / canu


Commits:
486984de by Andreas Tille at 2025-01-03T16:12:54+01:00
New upstream version 2.3+dfsg
- - - - -


30 changed files:

- README.md
- − scripts/version_update.pl
- src/Makefile
- + src/Makefile.boilermake
- src/bogart/AS_BAT_AssemblyGraph.C
- src/bogart/AS_BAT_AssemblyGraph.H
- src/bogart/AS_BAT_BestOverlapGraph.C
- src/bogart/AS_BAT_BestOverlapGraph.H
- src/bogart/AS_BAT_ChunkGraph.C
- src/bogart/AS_BAT_ChunkGraph.H
- src/bogart/AS_BAT_FindCircular.C
- src/bogart/AS_BAT_Instrumentation.C
- src/bogart/AS_BAT_Logging.C
- src/bogart/AS_BAT_Logging.H
- src/bogart/AS_BAT_MarkRepeatReads.C
- src/bogart/AS_BAT_MergeOrphans.C
- src/bogart/AS_BAT_MergeOrphans.H
- src/bogart/AS_BAT_OptimizePositions.C
- src/bogart/AS_BAT_OverlapCache.C
- src/bogart/AS_BAT_OverlapCache.H
- src/bogart/AS_BAT_PlaceContains.C
- src/bogart/AS_BAT_PlaceReadUsingOverlaps.C
- src/bogart/AS_BAT_ReadInfo.C
- src/bogart/AS_BAT_ReadInfo.H
- src/bogart/AS_BAT_SplitTig.H
- src/bogart/AS_BAT_TigVector.C
- src/bogart/AS_BAT_TigVector.H
- src/bogart/AS_BAT_Unitig.C
- src/bogart/AS_BAT_Unitig.H
- src/bogart/bogart.C


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/canu/-/commit/486984deae0cad590059e9627b5f248a4d79e282

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