[med-svn] [Git][med-team/canu][master] 5 commits: New upstream version 2.3+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / canu


Commits:
486984de by Andreas Tille at 2025-01-03T16:12:54+01:00
New upstream version 2.3+dfsg
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9e3259d2 by Andreas Tille at 2025-01-03T16:12:54+01:00
New upstream version

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ee3b6159 by Andreas Tille at 2025-01-03T16:12:58+01:00
Update upstream source from tag 'upstream/2.3+dfsg'

Update to upstream version '2.3+dfsg'
with Debian dir 316a71aa20c062b960e2c6ad7b30f582789abb6d
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dd24a40e by Andreas Tille at 2025-01-03T16:12:58+01:00
Standards-Version: 4.7.0 (routine-update)

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5b87adb0 by Andreas Tille at 2025-01-03T16:48:29+01:00
[skip ci] Adapt **ONLY SOME** patches - need to stop here for time constraints!!!

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30 changed files:

- README.md
- debian/changelog
- debian/control
- debian/patches/external-mhap.patch
- debian/patches/libsnappy
- debian/patches/stacktrace
- debian/patches/use-debian-mhap-at-runtime.patch
- − scripts/version_update.pl
- src/Makefile
- + src/Makefile.boilermake
- src/bogart/AS_BAT_AssemblyGraph.C
- src/bogart/AS_BAT_AssemblyGraph.H
- src/bogart/AS_BAT_BestOverlapGraph.C
- src/bogart/AS_BAT_BestOverlapGraph.H
- src/bogart/AS_BAT_ChunkGraph.C
- src/bogart/AS_BAT_ChunkGraph.H
- src/bogart/AS_BAT_FindCircular.C
- src/bogart/AS_BAT_Instrumentation.C
- src/bogart/AS_BAT_Logging.C
- src/bogart/AS_BAT_Logging.H
- src/bogart/AS_BAT_MarkRepeatReads.C
- src/bogart/AS_BAT_MergeOrphans.C
- src/bogart/AS_BAT_MergeOrphans.H
- src/bogart/AS_BAT_OptimizePositions.C
- src/bogart/AS_BAT_OverlapCache.C
- src/bogart/AS_BAT_OverlapCache.H
- src/bogart/AS_BAT_PlaceContains.C
- src/bogart/AS_BAT_PlaceReadUsingOverlaps.C
- src/bogart/AS_BAT_ReadInfo.C
- src/bogart/AS_BAT_ReadInfo.H


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/canu/-/compare/4faacd76715e85f6de739cc2410eac7cebc79579...5b87adb006dfd9cfb13dcd27a59b1594fad3b00a

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View it on GitLab: https://salsa.debian.org/med-team/canu/-/compare/4faacd76715e85f6de739cc2410eac7cebc79579...5b87adb006dfd9cfb13dcd27a59b1594fad3b00a
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