[med-svn] [Git][med-team/python-biopython][master] 7 commits: New upstream version

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / python-biopython


Commits:
7f24a458 by Michael R. Crusoe at 2025-01-29T15:21:40+01:00
New upstream version

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91a38f13 by Michael R. Crusoe at 2025-01-29T15:21:42+01:00
New upstream version 1.85+dfsg
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3ec14cd6 by Michael R. Crusoe at 2025-01-29T15:21:59+01:00
Update upstream source from tag 'upstream/1.85+dfsg'

Update to upstream version '1.85+dfsg'
with Debian dir 9e575f8720c664dd5950d45f4b733de01496ad86
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42a91392 by Michael R. Crusoe at 2025-01-29T15:23:39+01:00
Refreshed patches.

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c8d64ce3 by Michael R. Crusoe at 2025-01-29T15:36:38+01:00
Added python3-igraph as a recommend package and test dependency for use with Bio.Phylo.

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cef31b67 by Michael R. Crusoe at 2025-01-29T15:54:53+01:00
d/rules: resume running the Tutorial tests everywhere.

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3081a309 by Michael R. Crusoe at 2025-01-29T16:17:26+01:00
team upload

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28 changed files:

- .appveyor.yml
- .circleci/config.yml
- .github/workflows/ci.yml
- .pre-commit-config.yaml
- Bio/Align/__init__.py
- Bio/Align/_aligncore.c
- Bio/Align/_pairwisealigner.c
- Bio/Align/bigbed.py
- Bio/Align/interfaces.py
- Bio/Align/sam.py
- Bio/Align/stockholm.py
- Bio/Align/substitution_matrices/__init__.py
- Bio/AlignIO/MafIO.py
- Bio/Blast/NCBIWWW.py
- Bio/Blast/NCBIXML.py
- Bio/Blast/__init__.py
- Bio/Blast/_parser.py
- Bio/Blast/_writers.py
- Bio/Cluster/__init__.py
- Bio/Cluster/cluster.c
- Bio/Cluster/clustermodule.c
- Bio/Entrez/DTDs/esummary_clinvar.dtd
- Bio/Entrez/__init__.py
- Bio/GenBank/Scanner.py
- Bio/Nexus/Nexus.py
- Bio/Nexus/Nodes.py
- Bio/PDB/Atom.py
- Bio/PDB/StructureBuilder.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/compare/abbdc7edef831e561a4bf2813bb3abae753ae95a...3081a30924c7d6037d5f028c7d9365f293399286

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View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/compare/abbdc7edef831e561a4bf2813bb3abae753ae95a...3081a30924c7d6037d5f028c7d9365f293399286
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