[med-svn] [Git][med-team/genomethreader][master] enable shuffled builds

[Sascha Steinbiss (@satta)]

Sascha Steinbiss pushed to branch master at Debian Med / genomethreader


Commits:
6ccdbae3 by Sascha Steinbiss at 2025-11-10T02:25:56+01:00
enable shuffled builds

- - - - -


3 changed files:

- debian/changelog
- + debian/patches/config-dependencies.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+genomethreader (1.7.3+dfsg-11) unstable; urgency=medium
+
+  * Fix shuffled build.
+    Closes: #1105366
+
+ -- Sascha Steinbiss <satta at debian.org>  Mon, 10 Nov 2025 02:17:42 +0100
+
 genomethreader (1.7.3+dfsg-10) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/patches/config-dependencies.patch
=====================================
@@ -0,0 +1,24 @@
+Description: enable shuffled build
+Author: Sasscha Steinbiss <satta at debian.org>
+Forwarded: https://github.com/genometools/genomethreader/pull/29
+Last-Update: 2025-11-10
+--- a/Makefile
++++ b/Makefile
+@@ -337,7 +337,7 @@
+ 	$(CXX) -c $< -o $(@:.o=.d) $(EXP_CPPFLAGS) $(GTH_CPPFLAGS) -MM -MP \
+ 	  -MT $@
+ 
+-obj/src/core/versionfunc.o: obj/gth_config.h
++src/libgenomethreader/gthversionfunc.c: obj/gth_config.h
+ 
+ # read dependencies
+ -include $(LIBGENOMETHREADER_DEP) \
+@@ -535,7 +535,7 @@
+                           -gtdonor -agacceptor -gzip
+ 	@touch $@
+ 
+-obj/old_train: bin/gthmkbssmfiles
++obj/old_train: bin/gthmkbssmfiles obj/train
+ 	@echo "[write old BSSMs]"
+ 	@bin/gthmkbssmfiles bin/bssm
+ 	@touch $@


=====================================
debian/patches/series
=====================================
@@ -7,3 +7,4 @@ m32-m64-ignore.patch
 reproducible.patch
 disable-fastdp-tests.patch
 extend-clean.patch
+config-dependencies.patch



View it on GitLab: https://salsa.debian.org/med-team/genomethreader/-/commit/6ccdbae38ecfcfd4e6ce49fa0b8afcc45046825f

-- 
View it on GitLab: https://salsa.debian.org/med-team/genomethreader/-/commit/6ccdbae38ecfcfd4e6ce49fa0b8afcc45046825f
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