[med-svn] [Git][med-team/bifrost][master] 5 commits: New upstream version 1.3.5

[Sergio Durigan Junior (@sergiodj)]

Sergio Durigan Junior pushed to branch master at Debian Med / bifrost


Commits:
f83c67ff by Sergio Durigan Junior at 2025-10-04T12:04:06-04:00
New upstream version 1.3.5
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0aaae651 by Sergio Durigan Junior at 2025-10-04T12:04:07-04:00
Update upstream source from tag 'upstream/1.3.5'

Update to upstream version '1.3.5'
with Debian dir b2c9239b53201631bd66fcd075a05b2f19bb86e0
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d961b036 by Sergio Durigan Junior at 2025-10-04T12:08:37-04:00
d/t/data/*: Add example data to git repository.

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07cc627e by Sergio Durigan Junior at 2025-10-04T12:09:07-04:00
d/bifrost.examples: Bring back examples file.

Now that there's data to be installed, we can bring back the examples
file.

Closes: #1117180

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3b221fc8 by Sergio Durigan Junior at 2025-10-04T12:26:04-04:00
changelog for 1.3.5-1

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16 changed files:

- README.md
- + debian/bifrost.examples
- debian/changelog
- + debian/tests/data/README.data
- + debian/tests/data/ecoli_1K_1.fq.gz
- + debian/tests/data/ecoli_1K_2.fq.gz
- src/Bifrost.cpp
- src/ColoredCDBG.hpp
- src/ColoredCDBG.tcc
- src/Common.hpp
- src/CompactedDBG.hpp
- src/CompactedDBG.tcc
- src/KmerHashTable.hpp
- src/MinimizerIndex.cpp
- src/MinimizerIndex.hpp
- src/Search.tcc


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bifrost/-/compare/d0f5654bc7f08e723c20cbc3cdf1f2486d915e7f...3b221fc8ef7955d6917149858b542ff1e570ea02

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View it on GitLab: https://salsa.debian.org/med-team/bifrost/-/compare/d0f5654bc7f08e723c20cbc3cdf1f2486d915e7f...3b221fc8ef7955d6917149858b542ff1e570ea02
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