[med-svn] [Git][med-team/ctdconverter][master] 14 commits: New upstream version

Michael R. Crusoe (@crusoe) gitlab at salsa.debian.org
Sun Apr 19 12:29:07 BST 2026



Michael R. Crusoe pushed to branch master at Debian Med / ctdconverter


Commits:
a43c12dc by Michael R. Crusoe at 2026-04-19T12:20:52+02:00
New upstream version

- - - - -
34d48e10 by Michael R. Crusoe at 2026-04-19T12:20:53+02:00
New upstream version 3.0a1
- - - - -
5f948957 by Michael R. Crusoe at 2026-04-19T12:20:56+02:00
Update upstream source from tag 'upstream/3.0a1'

Update to upstream version '3.0a1'
with Debian dir e453937afa929ad1cbe1733ca5a10be2395ac2ad
- - - - -
f635ddab by Michael R. Crusoe at 2026-04-19T12:20:57+02:00
Standards-Version: 4.7.4 (routine-update)

- - - - -
7b08b919 by Michael R. Crusoe at 2026-04-19T12:23:53+02:00
debputy lint --auto-fix (routine-update)

- - - - -
1b430313 by Michael R. Crusoe at 2026-04-19T12:32:42+02:00
Refreshed patches, dropping 5 applied upstream or otherwise no longer needed.

- - - - -
f24d83b3 by Michael R. Crusoe at 2026-04-19T11:33:11+01:00
Update watch file format version to 5.

Changes-By: lintian-brush
Fixes: lintian: older-debian-watch-file-standard
See-also: https://lintian.debian.org/tags/older-debian-watch-file-standard.html

- - - - -
e5c7f5e7 by Michael R. Crusoe at 2026-04-19T11:33:11+01:00
Use GitHub template in watch file instead of explicit Source/Matching-Pattern.

Changes-By: lintian-brush

- - - - -
47379681 by Michael R. Crusoe at 2026-04-19T12:33:27+02:00
debputy lint --auto-fix (routine-update)

- - - - -
57107052 by Michael R. Crusoe at 2026-04-19T13:08:48+02:00
d/control: build using pybuild; test using pytest.

- - - - -
d18aa417 by Michael R. Crusoe at 2026-04-19T13:08:59+02:00
d/rules: fix path to the main script, for building the manual page.

- - - - -
9d3e5757 by Michael R. Crusoe at 2026-04-19T13:08:59+02:00
Remove duplicate line from changelog.

Changes-By: lintian-brush

- - - - -
cd22246c by Michael R. Crusoe at 2026-04-19T13:22:21+02:00
d/copyright: freshen paths

- - - - -
e18d58f7 by Michael R. Crusoe at 2026-04-19T13:22:52+02:00
upload to unstable

- - - - -


136 changed files:

- + .travis.yml
- LICENSE
- + Makefile
- README.md
- + create_galaxy_tests.sh
- + ctdconverter/__init__.py
- common/__init__.py → ctdconverter/common/__init__.py
- common/exceptions.py → ctdconverter/common/exceptions.py
- common/logger.py → ctdconverter/common/logger.py
- common/utils.py → ctdconverter/common/utils.py
- convert.py → ctdconverter/convert.py
- cwl/README.md → ctdconverter/cwl/README.md
- cwl/__init__.py → ctdconverter/cwl/__init__.py
- cwl/converter.py → ctdconverter/cwl/converter.py
- galaxy/README.md → ctdconverter/galaxy/README.md
- galaxy/__init__.py → ctdconverter/galaxy/__init__.py
- + ctdconverter/galaxy/converter.py
- + ctdconverter/galaxy/macros.xml
- debian/changelog
- debian/control
- debian/copyright
- − debian/patches/2to3.patch
- − debian/patches/add_setup.py.patch
- debian/patches/correct_name
- − debian/patches/py3_compat
- − debian/patches/python3-syntax.patch
- debian/patches/series
- − debian/patches/upgrade_deprecated_strip
- debian/rules
- − debian/tests/control
- − debian/tests/run-unit-test
- debian/watch
- − galaxy/converter.py
- − galaxy/macros.xml
- + setup.cfg
- + setup.py
- + tests/__init__.py
- + tests/test-data/bool
- + tests/test-data/bool.ctd
- + tests/test-data/bool.xml
- + tests/test-data/empty
- + tests/test-data/empty.ctd
- + tests/test-data/empty.xml
- + tests/test-data/filetypes.txt
- + tests/test-data/fill_ctd.py
- + tests/test-data/float
- + tests/test-data/float.ctd
- + tests/test-data/float.xml
- + tests/test-data/hardcoded_params.json
- + tests/test-data/ifile
- + tests/test-data/ifile.ctd
- + tests/test-data/ifile.xml
- + tests/test-data/integer
- + tests/test-data/integer.ctd
- + tests/test-data/integer.xml
- + tests/test-data/label-help
- + tests/test-data/label-help.ctd
- + tests/test-data/label-help.xml
- + tests/test-data/macros.xml
- + tests/test-data/mock.py
- + tests/test-data/ofile
- + tests/test-data/ofile-corresponding-input
- + tests/test-data/ofile-corresponding-input.ctd
- + tests/test-data/ofile-corresponding-input.xml
- + tests/test-data/ofile-mult
- + tests/test-data/ofile-mult-typeparam
- + tests/test-data/ofile-mult-typeparam.ctd
- + tests/test-data/ofile-mult-typeparam.xml
- + tests/test-data/ofile-mult.ctd
- + tests/test-data/ofile-mult.xml
- + tests/test-data/ofile-typeparam
- + tests/test-data/ofile-typeparam.ctd
- + tests/test-data/ofile-typeparam.xml
- + tests/test-data/ofile.ctd
- + tests/test-data/ofile.xml
- + tests/test-data/repeat_test
- + tests/test-data/repeat_test.ctd
- + tests/test-data/repeat_test.xml
- + tests/test-data/select_test
- + tests/test-data/select_test.ctd
- + tests/test-data/select_test.xml
- + tests/test-data/string
- + tests/test-data/string.ctd
- + tests/test-data/string.xml
- + tests/test-data/test-data/0test.ext
- + tests/test-data/test-data/0test2.ext
- + tests/test-data/test-data/10test.ext
- + tests/test-data/test-data/10test2.ext
- + tests/test-data/test-data/11test.ext
- + tests/test-data/test-data/11test2.ext
- + tests/test-data/test-data/12test.ext
- + tests/test-data/test-data/12test2.ext
- + tests/test-data/test-data/13test.ext
- + tests/test-data/test-data/13test2.ext
- + tests/test-data/test-data/14test.ext
- + tests/test-data/test-data/14test2.ext
- + tests/test-data/test-data/15test.ext
- + tests/test-data/test-data/15test2.ext
- + tests/test-data/test-data/16test.ext
- + tests/test-data/test-data/16test2.ext
- + tests/test-data/test-data/17test.ext
- + tests/test-data/test-data/17test2.ext
- + tests/test-data/test-data/18test.ext
- + tests/test-data/test-data/18test2.ext
- + tests/test-data/test-data/19test.ext
- + tests/test-data/test-data/19test2.ext
- + tests/test-data/test-data/1test.ext
- + tests/test-data/test-data/1test2.ext
- + tests/test-data/test-data/20test.ext
- + tests/test-data/test-data/20test2.ext
- + tests/test-data/test-data/21test.ext
- + tests/test-data/test-data/21test2.ext
- + tests/test-data/test-data/22test.ext
- + tests/test-data/test-data/22test2.ext
- + tests/test-data/test-data/23test.ext
- + tests/test-data/test-data/23test2.ext
- + tests/test-data/test-data/2test.ext
- + tests/test-data/test-data/2test2.ext
- + tests/test-data/test-data/3test.ext
- + tests/test-data/test-data/3test2.ext
- + tests/test-data/test-data/4test.ext
- + tests/test-data/test-data/4test2.ext
- + tests/test-data/test-data/5test.ext
- + tests/test-data/test-data/5test2.ext
- + tests/test-data/test-data/6test.ext
- + tests/test-data/test-data/6test2.ext
- + tests/test-data/test-data/7test.ext
- + tests/test-data/test-data/7test2.ext
- + tests/test-data/test-data/8test.ext
- + tests/test-data/test-data/8test2.ext
- + tests/test-data/test-data/9test.ext
- + tests/test-data/test-data/9test2.ext
- + tests/test-data/test-data/outfile.txt
- + tests/test-data/test-data/test.ext
- + tests/test-data/test-data/test2.ext
- + tests/test_galaxy_cli.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/ctdconverter/-/compare/87c7f4f6e5de554c65e59dad44e51aaba8086f01...e18d58f7cfe1aebfae65f16730b1b2ff55cbe1f1

-- 
View it on GitLab: https://salsa.debian.org/med-team/ctdconverter/-/compare/87c7f4f6e5de554c65e59dad44e51aaba8086f01...e18d58f7cfe1aebfae65f16730b1b2ff55cbe1f1
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20260419/73497355/attachment-0001.htm>


More information about the debian-med-commit mailing list