[med-svn] [Git][med-team/ctdconverter][upstream] New upstream version 3.0a1

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch upstream at Debian Med / ctdconverter


Commits:
34d48e10 by Michael R. Crusoe at 2026-04-19T12:20:53+02:00
New upstream version 3.0a1
- - - - -


122 changed files:

- + .travis.yml
- LICENSE
- + Makefile
- README.md
- + create_galaxy_tests.sh
- + ctdconverter/__init__.py
- common/__init__.py → ctdconverter/common/__init__.py
- common/exceptions.py → ctdconverter/common/exceptions.py
- common/logger.py → ctdconverter/common/logger.py
- common/utils.py → ctdconverter/common/utils.py
- convert.py → ctdconverter/convert.py
- cwl/README.md → ctdconverter/cwl/README.md
- cwl/__init__.py → ctdconverter/cwl/__init__.py
- cwl/converter.py → ctdconverter/cwl/converter.py
- galaxy/README.md → ctdconverter/galaxy/README.md
- galaxy/__init__.py → ctdconverter/galaxy/__init__.py
- + ctdconverter/galaxy/converter.py
- + ctdconverter/galaxy/macros.xml
- − galaxy/converter.py
- − galaxy/macros.xml
- + setup.cfg
- + setup.py
- + tests/__init__.py
- + tests/test-data/bool
- + tests/test-data/bool.ctd
- + tests/test-data/bool.xml
- + tests/test-data/empty
- + tests/test-data/empty.ctd
- + tests/test-data/empty.xml
- + tests/test-data/filetypes.txt
- + tests/test-data/fill_ctd.py
- + tests/test-data/float
- + tests/test-data/float.ctd
- + tests/test-data/float.xml
- + tests/test-data/hardcoded_params.json
- + tests/test-data/ifile
- + tests/test-data/ifile.ctd
- + tests/test-data/ifile.xml
- + tests/test-data/integer
- + tests/test-data/integer.ctd
- + tests/test-data/integer.xml
- + tests/test-data/label-help
- + tests/test-data/label-help.ctd
- + tests/test-data/label-help.xml
- + tests/test-data/macros.xml
- + tests/test-data/mock.py
- + tests/test-data/ofile
- + tests/test-data/ofile-corresponding-input
- + tests/test-data/ofile-corresponding-input.ctd
- + tests/test-data/ofile-corresponding-input.xml
- + tests/test-data/ofile-mult
- + tests/test-data/ofile-mult-typeparam
- + tests/test-data/ofile-mult-typeparam.ctd
- + tests/test-data/ofile-mult-typeparam.xml
- + tests/test-data/ofile-mult.ctd
- + tests/test-data/ofile-mult.xml
- + tests/test-data/ofile-typeparam
- + tests/test-data/ofile-typeparam.ctd
- + tests/test-data/ofile-typeparam.xml
- + tests/test-data/ofile.ctd
- + tests/test-data/ofile.xml
- + tests/test-data/repeat_test
- + tests/test-data/repeat_test.ctd
- + tests/test-data/repeat_test.xml
- + tests/test-data/select_test
- + tests/test-data/select_test.ctd
- + tests/test-data/select_test.xml
- + tests/test-data/string
- + tests/test-data/string.ctd
- + tests/test-data/string.xml
- + tests/test-data/test-data/0test.ext
- + tests/test-data/test-data/0test2.ext
- + tests/test-data/test-data/10test.ext
- + tests/test-data/test-data/10test2.ext
- + tests/test-data/test-data/11test.ext
- + tests/test-data/test-data/11test2.ext
- + tests/test-data/test-data/12test.ext
- + tests/test-data/test-data/12test2.ext
- + tests/test-data/test-data/13test.ext
- + tests/test-data/test-data/13test2.ext
- + tests/test-data/test-data/14test.ext
- + tests/test-data/test-data/14test2.ext
- + tests/test-data/test-data/15test.ext
- + tests/test-data/test-data/15test2.ext
- + tests/test-data/test-data/16test.ext
- + tests/test-data/test-data/16test2.ext
- + tests/test-data/test-data/17test.ext
- + tests/test-data/test-data/17test2.ext
- + tests/test-data/test-data/18test.ext
- + tests/test-data/test-data/18test2.ext
- + tests/test-data/test-data/19test.ext
- + tests/test-data/test-data/19test2.ext
- + tests/test-data/test-data/1test.ext
- + tests/test-data/test-data/1test2.ext
- + tests/test-data/test-data/20test.ext
- + tests/test-data/test-data/20test2.ext
- + tests/test-data/test-data/21test.ext
- + tests/test-data/test-data/21test2.ext
- + tests/test-data/test-data/22test.ext
- + tests/test-data/test-data/22test2.ext
- + tests/test-data/test-data/23test.ext
- + tests/test-data/test-data/23test2.ext
- + tests/test-data/test-data/2test.ext
- + tests/test-data/test-data/2test2.ext
- + tests/test-data/test-data/3test.ext
- + tests/test-data/test-data/3test2.ext
- + tests/test-data/test-data/4test.ext
- + tests/test-data/test-data/4test2.ext
- + tests/test-data/test-data/5test.ext
- + tests/test-data/test-data/5test2.ext
- + tests/test-data/test-data/6test.ext
- + tests/test-data/test-data/6test2.ext
- + tests/test-data/test-data/7test.ext
- + tests/test-data/test-data/7test2.ext
- + tests/test-data/test-data/8test.ext
- + tests/test-data/test-data/8test2.ext
- + tests/test-data/test-data/9test.ext
- + tests/test-data/test-data/9test2.ext
- + tests/test-data/test-data/outfile.txt
- + tests/test-data/test-data/test.ext
- + tests/test-data/test-data/test2.ext
- + tests/test_galaxy_cli.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/ctdconverter/-/commit/34d48e10947a183e6bf87cdf44fe8b99f3d591a1

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