[med-svn] [Git][med-team/python-biopython][master] 9 commits: New upstream version 1.88+dfsg

[Karsten Schöke (@karso)]

Karsten Schöke pushed to branch master at Debian Med / python-biopython


Commits:
a8c8cc53 by Karsten Schöke at 2026-08-07T13:41:24+02:00
New upstream version 1.88+dfsg
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dac8435c by Karsten Schöke at 2026-08-07T13:42:27+02:00
Update upstream source from tag 'upstream/1.88+dfsg'

Update to upstream version '1.88+dfsg'
with Debian dir 8c2083fedc8c6bc2b2ce13b36722da0ef3eccaff

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5dcb2c8c by Karsten Schöke at 2026-08-07T13:42:57+02:00
Changes made by cme

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d795c9d0 by Karsten Schöke at 2026-08-07T12:43:15+01:00
Set upstream metadata fields: Documentation, Repository, Repository-Browse, Security-Contact.

Changes-By: lintian-brush
Fixes: lintian: source: upstream-metadata-missing-repository [debian/upstream/metadata]
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html

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71c89091 by Karsten Schöke at 2026-08-07T13:43:20+02:00
debputy lint --auto-fix (routine-update)

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263b4aa7 by Karsten Schöke at 2026-08-07T16:17:11+02:00
upstream change to PEP-517.

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8cfa6eae by Karsten Schöke at 2026-08-07T16:19:06+02:00
d/rules: Fix FTBR: The second build is invoked with the `nocheck` option and therefore fails.

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440f7b51 by Karsten Schöke at 2026-08-07T17:13:23+02:00
d/rules: Delete unnecessary top_level.txt

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e358b5dc by Karsten Schöke at 2026-08-07T17:15:05+02:00
Update changelog for 1.88+dfsg-1 release

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73 changed files:

- .appveyor.yml
- .circleci/config.yml
- .github/deploy_docs.sh
- .github/workflows/ci.yml
- .mypy.ini
- .pre-commit-config.yaml
- Bio/Affy/CelFile.py
- Bio/Align/AlignInfo.py
- Bio/Align/__init__.py
- Bio/Align/bigbed.py
- Bio/Align/bigmaf.py
- Bio/Align/bigpsl.py
- Bio/Align/sam.py
- Bio/Blast/_parser.py
- Bio/GenBank/Record.py
- Bio/GenBank/Scanner.py
- Bio/Nexus/Nexus.py
- Bio/Nexus/Trees.py
- Bio/PDB/Atom.py
- Bio/PDB/PDBIO.py
- Bio/PDB/internal_coords.py
- Bio/PDB/vectors.py
- Bio/Pathway/__init__.py
- Bio/Phylo/BaseTree.py
- Bio/Phylo/CDAO.py
- Bio/Phylo/NewickIO.py
- Bio/Restriction/Restriction.py
- Bio/SearchIO/InfernalIO/infernal_tab.py
- Bio/SearchIO/_model/hsp.py
- Bio/Seq.py
- Bio/SeqIO/AceIO.py
- Bio/SeqIO/FastaIO.py
- Bio/SeqIO/GckIO.py
- Bio/SeqIO/GfaIO.py
- Bio/SeqIO/Interfaces.py
- Bio/SeqIO/PdbIO.py
- Bio/SeqIO/PhdIO.py
- Bio/SeqIO/QualityIO.py
- Bio/SeqIO/SffIO.py
- Bio/SeqIO/SnapGeneIO.py
- Bio/SeqIO/SwissIO.py
- Bio/SeqIO/TabIO.py
- Bio/SeqIO/UniprotIO.py
- Bio/SeqIO/XdnaIO.py
- Bio/SeqIO/__init__.py
- Bio/SeqRecord.py
- Bio/__init__.py
- Bio/motifs/jaspar/db.py
- Bio/pairwise2.py
- BioSQL/BioSeqDatabase.py
- CONTRIB.rst
- CONTRIBUTING.rst
- DEPRECATED.rst
- Doc/Tutorial/chapter_motifs.rst
- Doc/Tutorial/chapter_pairwise.rst
- NEWS.rst
- README.rst
- Scripts/Restriction/ranacompiler.py
- Tests/common_BioSQL.py
- Tests/seq_tests_common.py
- Tests/test_Align_Alignment.py
- Tests/test_Align_bigbed.py
- Tests/test_Align_psl.py
- Tests/test_GenBank.py
- Tests/test_PDB_alphafold_db.py
- Tests/test_Phylo.py
- debian/changelog
- debian/control
- debian/python3-biopython.install
- debian/rules
- debian/upstream/metadata
- debian/watch
- − hht2+-1000.dna


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/compare/f8a6318925b469010cbec7130bf017bdd29c935a...e358b5dc59b531d993cfef868e4617233456a4e5

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View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/compare/f8a6318925b469010cbec7130bf017bdd29c935a...e358b5dc59b531d993cfef868e4617233456a4e5
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