[med-svn] [Git][med-team/toil][master] 8 commits: d/watch: find new releases

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / toil


Commits:
170ed1ac by Michael R. Crusoe at 2026-08-24T14:41:42+02:00
d/watch: find new releases

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bca17f58 by Michael R. Crusoe at 2026-08-24T14:42:07+02:00
New upstream version

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a86ebb48 by Michael R. Crusoe at 2026-08-24T14:42:08+02:00
New upstream version 9.5.0
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c261c5c4 by Michael R. Crusoe at 2026-08-24T14:42:24+02:00
Update upstream source from tag 'upstream/9.5.0'

Update to upstream version '9.5.0'
with Debian dir f2364c59a12a5a17bd7aeb8fe50470ea1d871fa5
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88fea863 by Michael R. Crusoe at 2026-08-24T14:45:29+02:00
Refreshed patches.

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0635e68c by Michael R. Crusoe at 2026-08-24T16:44:58+02:00
d/rules: skip a test that requires the currently unpackaged "edit_distance".

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82401d75 by Michael R. Crusoe at 2026-08-24T17:39:16+02:00
d/control: only target the default Python version. Closes: #1141066.

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d6fb6928 by Michael R. Crusoe at 2026-08-24T17:39:16+02:00
upload to unstable.

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51 changed files:

- .gitlab-ci.yml
- BOTS.md
- debian/changelog
- debian/control
- debian/patches/atomic_copy_as_alternative.patch
- debian/patches/fix_tests
- + debian/patches/optional-edit-distance
- debian/patches/series
- debian/patches/setting_version.patch
- debian/rules
- debian/watch
- docker/Dockerfile.py
- docs/appendices/environment_vars.rst
- docs/running/cliOptions.rst
- requirements-dev.txt
- src/toil/batchSystems/kubernetes.py
- src/toil/batchSystems/slurm.py
- src/toil/common.py
- src/toil/cwl/cwltoil.py
- src/toil/fileStores/abstractFileStore.py
- src/toil/fileStores/cachingFileStore.py
- src/toil/fileStores/nonCachingFileStore.py
- src/toil/job.py
- src/toil/jobStores/abstractJobStore.py
- src/toil/jobStores/aws/jobStore.py
- src/toil/jobStores/fileJobStore.py
- src/toil/jobStores/googleJobStore.py
- src/toil/jobStores/utils.py
- src/toil/leader.py
- src/toil/lib/aws/s3.py
- src/toil/lib/generatedEC2Lists.py
- src/toil/lib/threading.py
- src/toil/provisioners/clusterScaler.py
- src/toil/statsAndLogging.py
- src/toil/test/__init__.py
- src/toil/test/batchSystems/test_slurm.py
- src/toil/test/cwl/cwlTest.py
- + src/toil/test/cwl/whalesay.json
- src/toil/test/jobStores/jobStoreTest.py
- src/toil/test/options/options.py
- src/toil/test/server/serverTest.py
- + src/toil/test/src/commonTests.py
- src/toil/test/src/fileStoreTest.py
- src/toil/test/src/jobTest.py
- src/toil/test/src/threadingTest.py
- src/toil/test/utils/toilDebugTest.py
- src/toil/test/utils/utilsTest.py
- src/toil/utils/toilLaunchCluster.py
- src/toil/wdl/wdltoil.py
- src/toil/worker.py
- version_template.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/53ee8965a2dcf479fb98a0edb29a5fcc1a11c7c1...d6fb6928b4822f5300211d59724d255eae010922

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View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/53ee8965a2dcf479fb98a0edb29a5fcc1a11c7c1...d6fb6928b4822f5300211d59724d255eae010922
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