[med-svn] [Git][med-team/mothur][master] 10 commits: New upstream version 1.48.2

[Tomasz Buchert (@tomasz)]

Tomasz Buchert pushed to branch master at Debian Med / mothur


Commits:
73ec5ffb by Tomasz Buchert at 2026-02-07T19:58:24+01:00
New upstream version 1.48.2
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66d56090 by Tomasz Buchert at 2026-02-07T19:59:54+01:00
Update upstream source from tag 'upstream/1.48.2'

Update to upstream version '1.48.2'
with Debian dir e53e4195cf301a52b7e7784abeaf56fb829ea285
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b8b153f2 by Tomasz Buchert at 2026-02-07T20:00:05+01:00
New upstream version 1.48.3
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e6e05b34 by Tomasz Buchert at 2026-02-07T20:01:33+01:00
Update upstream source from tag 'upstream/1.48.3'

Update to upstream version '1.48.3'
with Debian dir e53e4195cf301a52b7e7784abeaf56fb829ea285
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630b4617 by Tomasz Buchert at 2026-02-07T20:01:43+01:00
New upstream version 1.48.4
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9eeda6c5 by Tomasz Buchert at 2026-02-07T20:03:13+01:00
Update upstream source from tag 'upstream/1.48.4'

Update to upstream version '1.48.4'
with Debian dir e53e4195cf301a52b7e7784abeaf56fb829ea285
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2f5d23c0 by Tomasz Buchert at 2026-02-07T20:03:28+01:00
New upstream version 1.48.5
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87d987d3 by Tomasz Buchert at 2026-02-07T20:03:33+01:00
Update upstream source from tag 'upstream/1.48.5'

Update to upstream version '1.48.5'
with Debian dir e53e4195cf301a52b7e7784abeaf56fb829ea285
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a6d0d356 by Tomasz Buchert at 2026-02-07T20:08:33+01:00
refresh patches

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5fff662d by Tomasz Buchert at 2026-02-07T21:29:43+01:00
release

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56 changed files:

- .gitignore
- External_Libraries_INSTALL
- Makefile
- Mothur.xcodeproj/project.pbxproj
- TestMothur/dataset.cpp
- TestMothur/testcontainers/testsharedrabundfloatvector.hpp
- TestMothur/testsubsample.hpp
- TestMothur/testtrimoligos.hpp
- Ubuntu_20_Build.txt
- debian/changelog
- debian/control
- debian/patches/0002-Fix-include.patch
- debian/patches/add-hardening-opts.patch
- debian/patches/c++14.patch
- debian/patches/fix_linking.patch
- source/calculators/structeuclidean.cpp
- source/calculators/structeuclidean.h
- source/classifier/classify.cpp
- source/commands/aligncommand.cpp
- source/commands/chimerauchimecommand.cpp
- source/commands/chimeravsearchcommand.cpp
- source/commands/clearcutcommand.cpp
- source/commands/clustercommand.cpp
- source/commands/countseqscommand.cpp
- source/commands/distsharedcommand.cpp
- source/commands/distsharedcommand.h
- source/commands/getseqscommand.cpp
- source/commands/lefsecommand.cpp
- source/commands/makeclrcommand.cpp
- source/commands/makecontigscommand.cpp
- source/commands/pcrseqscommand.cpp
- source/commands/preclustercommand.cpp
- source/commands/rarefactsharedcommand.cpp
- source/commands/removegroupscommand.cpp
- source/commands/screenseqscommand.cpp
- source/commands/seqerrorcommand.cpp
- source/datastructures/counttable.cpp
- source/datastructures/optidata.cpp
- source/datastructures/optidata.hpp
- − source/datastructures/optidb.cpp
- − source/datastructures/optidb.hpp
- source/datastructures/optimatrix.cpp
- source/datastructures/qualityscores.cpp
- source/datastructures/sequence.cpp
- source/engines/engine.hpp
- source/fileoutput.cpp
- source/linearalgebra.cpp
- source/mothur.h
- source/raredisplay.cpp
- source/raredisplay.h
- source/rarefactioncurvedata.h
- source/summary.cpp
- source/uchime_src/makefile
- source/utils.cpp
- source/validcalculator.cpp
- source/validcalculator.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/mothur/-/compare/01f1324c8120146b88b872a1363125462e30d9bb...5fff662d08c5cc3a98eb6aeac2a6b6c019c25b46

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View it on GitLab: https://salsa.debian.org/med-team/mothur/-/compare/01f1324c8120146b88b872a1363125462e30d9bb...5fff662d08c5cc3a98eb6aeac2a6b6c019c25b46
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