[med-svn] [Git][med-team/python-treetime][upstream] New upstream version 0.12.1

[Karsten Schöke (@karso)]

Karsten Schöke pushed to branch upstream at Debian Med / python-treetime


Commits:
f102ecd5 by Karsten Schöke at 2026-06-03T08:47:28+02:00
New upstream version 0.12.1
- - - - -


46 changed files:

- .pylintrc
- Makefile
- benchmarking/sequence_algorithms.py
- benchmarking/timetree_algorithms.py
- changelog.md
- contributing.md
- docs/source/conf.py
- docs/source/index.rst
- + pylint_source_reporter.py
- + pyproject.toml
- + pyrightconfig.json
- + release
- + scripts/extract-release-notes
- setup.py
- test/coalescent_tests.py
- test/fft_accuracy.ipynb
- test/fft_tests.py
- test/fft_timer.py
- test/test_calc_nbranches.py
- test/test_treetime.py
- test/test_vcf.py
- treetime/CLI_io.py
- treetime/__init__.py
- treetime/__main__.py
- treetime/aa_models.py
- treetime/arg.py
- treetime/argument_parser.py
- treetime/branch_len_interpolator.py
- treetime/clock_filter_methods.py
- treetime/clock_tree.py
- treetime/config.py
- treetime/distribution.py
- treetime/gtr.py
- treetime/gtr_site_specific.py
- treetime/merger_models.py
- treetime/node_interpolator.py
- treetime/nuc_models.py
- treetime/seq_utils.py
- treetime/seqgen.py
- treetime/sequence_data.py
- treetime/treeanc.py
- treetime/treeregression.py
- treetime/treetime.py
- treetime/utils.py
- treetime/vcf_utils.py
- treetime/wrappers.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-treetime/-/commit/f102ecd5cbd3d8b7c63f26b0f7efdd6d6b020a51

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View it on GitLab: https://salsa.debian.org/med-team/python-treetime/-/commit/f102ecd5cbd3d8b7c63f26b0f7efdd6d6b020a51
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