[med-svn] [Git][med-team/nanopolish][master] 2 commits: d/watch: version=5

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / nanopolish


Commits:
cd634d0f by Andreas Tille at 2026-06-11T20:49:17+02:00
d/watch: version=5

- - - - -
e4f90e7e by Andreas Tille at 2026-06-11T21:16:15+02:00
libeigen 5.0 requires minimum -std=c++14 Closes: #1136251

- - - - -


4 changed files:

- debian/changelog
- + debian/patches/libeigen5.0.patch
- debian/patches/series
- debian/watch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+nanopolish (0.14.0-3) UNRELEASED; urgency=medium
+
+  * d/watch: version=5
+  * libeigen 5.0 requires minimum -std=c++14
+    Closes: #1136251
+
+ -- Andreas Tille <tille at debian.org>  Thu, 11 Jun 2026 20:47:26 +0200
+
 nanopolish (0.14.0-2) unstable; urgency=medium
 
   * Team Upload.


=====================================
debian/patches/libeigen5.0.patch
=====================================
@@ -0,0 +1,16 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: 2026-06-11
+Bug-Debian: https://bugs.debian.org/1136251
+Description: libeigen 5.0 requires minimum -std=c++14
+
+--- a/Makefile
++++ b/Makefile
+@@ -10,7 +10,7 @@ SUBDIRS := src src/hmm src/thirdparty sr
+ #Basic flags every build needs
+ LIBS = -lz
+ CXXFLAGS ?= -g -O3
+-CXXFLAGS += -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 
++CXXFLAGS += -std=c++14 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 
+ CFLAGS ?= -O3 -std=c99 -fsigned-char -D_FILE_OFFSET_BITS=64
+ LDFLAGS ?=
+ CXX ?= g++


=====================================
debian/patches/series
=====================================
@@ -4,3 +4,4 @@ fix_remaining_python_interpreters.patch
 staticMinimap2Library.patch
 link_ext_slow5lib.patch
 gcc-15.patch
+libeigen5.0.patch


=====================================
debian/watch
=====================================
@@ -1,4 +1,5 @@
-version=4
+Version: 5
 
-opts="filenamemangle=s/(?:.*?)?v?(\d[\d.]*)\.tar\.gz/nanopolish-$1.tar.gz/" \
-https://github.com/jts/nanopolish/tags (?:.*?/)?v?(\d[\d.]*)\.tar\.gz
+Source: https://github.com/jts/nanopolish
+Matching-Pattern: refs/tags/v?(\d[\d.]+)
+Mode: git



View it on GitLab: https://salsa.debian.org/med-team/nanopolish/-/compare/a1aad2475964f9a82e41c8e1f6a0ca0f1c1d771b...e4f90e7e0a43166f6eab49d959647a02366a92ea

-- 
View it on GitLab: https://salsa.debian.org/med-team/nanopolish/-/compare/a1aad2475964f9a82e41c8e1f6a0ca0f1c1d771b...e4f90e7e0a43166f6eab49d959647a02366a92ea
You're receiving this email because of your account on salsa.debian.org. Manage all notifications: https://salsa.debian.org/-/profile/notifications | Help: https://salsa.debian.org/help


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20260611/d24cc441/attachment-0001.htm>