[med-svn] [Git][med-team/kallisto][master] Do not build with -march=native Closes: #1128956

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / kallisto


Commits:
919b8d13 by Andreas Tille at 2026-05-22T22:25:48+02:00
Do not build with -march=native Closes: #1128956

- - - - -


3 changed files:

- debian/changelog
- + debian/patches/baseline.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+kallisto (0.51.1+dfsg-2) UNRELEASED; urgency=medium
+
+  [ Adrian Bunk ]
+  * Do not build with -march=native
+    Closes: #1128956
+
+ -- Andreas Tille <tille at debian.org>  Fri, 22 May 2026 22:24:48 +0200
+
 kallisto (0.51.1+dfsg-1) unstable; urgency=medium
 
   [ Andreas Tille ]


=====================================
debian/patches/baseline.patch
=====================================
@@ -0,0 +1,17 @@
+Author: Adrian Bunk <bunk at debian.org>
+Last-Update: 2026-02-24
+Bug-Debian: https://bugs.debian.org/1128956
+Description: Do not build with -march=native
+
+--- a/ext/bifrost/CMakeLists.txt
++++ b/ext/bifrost/CMakeLists.txt
+@@ -8,7 +8,8 @@ find_package(Threads REQUIRED)
+ SET(MAX_KMER_SIZE "31" CACHE STRING "MAX_KMER_SIZE")
+ SET(MAX_GMER_SIZE "63" CACHE STRING "MAX_GMER_SIZE")
+ # Enable architecture optimizations
+-SET(COMPILATION_ARCH "native" CACHE STRING "COMPILATION_ARCH")
++# SET(COMPILATION_ARCH "native" CACHE STRING "COMPILATION_ARCH")
++SET(COMPILATION_ARCH "OFF" CACHE STRING "COMPILATION_ARCH")
+ # Enable AVX2 instructions
+ SET(ENABLE_AVX2 "ON" CACHE STRING "ENABLE_AVX2")
+ 


=====================================
debian/patches/series
=====================================
@@ -8,3 +8,4 @@ bifrost_typo.patch
 std_gnu17.patch
 cmake4.patch
 fix_testing.patch
+baseline.patch



View it on GitLab: https://salsa.debian.org/med-team/kallisto/-/commit/919b8d139f02be7e4c7da2b1c7f36ec3895b5bb5

-- 
View it on GitLab: https://salsa.debian.org/med-team/kallisto/-/commit/919b8d139f02be7e4c7da2b1c7f36ec3895b5bb5
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