[med-svn] [Git][med-team/kallisto][master] 2 commits: Update standards version to 4.7.4, no changes needed.

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / kallisto


Commits:
06007302 by Andreas Tille at 2026-05-23T05:44:01+01:00
Update standards version to 4.7.4, no changes needed.

Upgrade checklist verified:
 4.7.3 → 4.7.4:
  * Package is not in non-free-firmware

Changes-By: lintian-brush
Fixes: lintian: source: out-of-date-standards-version 4.7.3 (released 2025-12-23) (current is 4.7.4.1)
See-also: https://lintian.debian.org/tags/out-of-date-standards-version.html

- - - - -
cd4769a5 by Andreas Tille at 2026-05-23T07:01:09+02:00
d/rules: Remove core dump from failed test to not make it into the resulting package.  The proper fix would certainly be to fix the test!)

- - - - -


3 changed files:

- debian/changelog
- debian/control
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -4,6 +4,11 @@ kallisto (0.51.1+dfsg-2) UNRELEASED; urgency=medium
   * Do not build with -march=native
     Closes: #1128956
 
+  [ Andreas Tille ]
+  * Update standards version to 4.7.4, no changes needed.
+  * d/rules: Remove core dump from failed test to not make it into the
+    resulting package.  The proper fix would certainly be to fix the test!)
+
  -- Andreas Tille <tille at debian.org>  Fri, 22 May 2026 22:24:48 +0200
 
 kallisto (0.51.1+dfsg-1) unstable; urgency=medium


=====================================
debian/control
=====================================
@@ -1,5 +1,5 @@
 Source: kallisto
-Standards-Version: 4.7.3
+Standards-Version: 4.7.4
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders:
  Andreas Tille <tille at debian.org>,


=====================================
debian/rules
=====================================
@@ -23,3 +23,9 @@ override_dh_auto_test:
 	cd test && PATH=$$(find ../obj-* -name src):$(PATH) HOME=$$(mktemp --directory) XDG_CACHE_HOME=$(mktemp --directory) snakemake --cores 1 || true
 	rm -rf test/.snakemake test/bus_out test/quant_out/run_info.json test/transcripts.kidx.gz \
 	        test/quant_out test/transcripts.kidx
+	# FIXME:
+	# ./src/kallisto quant -o ./func_tests/quantbasic -i ./func_tests/basic7.idx --single -l 5 -s 2 ./func_tests/small.fastq.gz
+	# ./func_tests/runtests.sh: line 12: 299146 Segmentation fault         (core dumped) ./src/kallisto quant -o ./func_tests/quantbasic -i ./func_tests/basic7.idx --single -l 5 -s 2 ./func_tests/small.fastq.gz 2> /dev/null > /dev/null
+	#[Failed]
+	#    This might leave a core file which should at least be removed to not make it into the final package
+	find . -name core --delete



View it on GitLab: https://salsa.debian.org/med-team/kallisto/-/compare/919b8d139f02be7e4c7da2b1c7f36ec3895b5bb5...cd4769a5bda571b3e9cca131720f1e8f95e583bb

-- 
View it on GitLab: https://salsa.debian.org/med-team/kallisto/-/compare/919b8d139f02be7e4c7da2b1c7f36ec3895b5bb5...cd4769a5bda571b3e9cca131720f1e8f95e583bb
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