[med-svn] [Git][med-team/qcumber][master] 7 commits: d/watch: version=5
Andreas Tille (@tille)
gitlab at salsa.debian.org
Thu Oct 22 16:31:40 BST 2026
Andreas Tille pushed to branch master at Debian Med / qcumber
Commits:
15f4f53c by Andreas Tille at 2026-10-22T15:51:03+02:00
d/watch: version=5
- - - - -
3a127a85 by Andreas Tille at 2026-10-22T15:51:33+02:00
r-bioc-savr was reintroduced to Debian Closes: #1149199
- - - - -
156ff01e by Andreas Tille at 2026-10-22T14:52:53+01:00
Reformat the Last-Update date as ISO YYYY-MM-DD.
Changes-By: lintian-brush
Fixes: lintian: source: invalid-dep3-format-patch-wrong-last-update [debian/patches/yaml_load.patch]
See-also: https://lintian.debian.org/tags/invalid-dep3-format-patch-wrong-last-update.html
- - - - -
9cde2180 by Andreas Tille at 2026-10-22T14:52:53+01:00
Update standards version to 4.7.4, no changes needed.
Upgrade checklist verified:
4.7.3 → 4.7.4:
* Package is not in non-free-firmware
Changes-By: lintian-brush
Fixes: lintian: source: out-of-date-standards-version 4.7.2 (released 2025-02-27) (current is 4.7.4.1)
See-also: https://lintian.debian.org/tags/out-of-date-standards-version.html
- - - - -
5187f2dd by Andreas Tille at 2026-10-22T14:52:53+01:00
Update lintian override info format in d/source/lintian-overrides on line 3.
Changes-By: lintian-brush
Fixes: lintian: source: mismatched-override qcumber source: source-contains-prebuilt-javascript-object .pc* [debian/source/lintian-overrides:3]
See-also: https://lintian.debian.org/tags/mismatched-override.html
- - - - -
6f144099 by Andreas Tille at 2026-10-22T14:52:53+01:00
Run debconf-updatepo after template changes.
Changes-By: lintian-brush
Fixes: lintian: source: newer-debconf-templates [debian/po/templates.pot]
See-also: https://lintian.debian.org/tags/newer-debconf-templates.html
- - - - -
9a3f7e37 by Andreas Tille at 2026-10-22T15:54:26+02:00
Fix DEP3 last-updated
- - - - -
8 changed files:
- debian/changelog
- debian/control
- debian/patches/set_absolute_path_to_tex_template.patch
- debian/patches/yaml_load.patch
- debian/po/es.po
- debian/po/ru.po
- debian/source/lintian-overrides
- debian/watch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,15 @@
+qcumber (2.3.0-4) UNRELEASED; urgency=medium
+
+ * d/watch: version=5
+ * r-bioc-savr was reintroduced to Debian
+ Closes: #1149199
+ * Update standards version to 4.7.4, no changes needed.
+ * Update lintian override info format in d/source/lintian-overrides on line 3.
+ * Run debconf-updatepo after template changes.
+ * Fix DEP3 last-updated
+
+ -- Andreas Tille <tille at debian.org> Thu, 22 Oct 2026 15:50:49 +0200
+
qcumber (2.3.0-3) unstable; urgency=medium
* Team upload.
=====================================
debian/control
=====================================
@@ -11,7 +11,7 @@ Build-Depends: debhelper-compat (= 13),
bowtie2,
kraken,
texlive-latex-base
-Standards-Version: 4.7.2
+Standards-Version: 4.7.4
Vcs-Browser: https://salsa.debian.org/med-team/qcumber
Vcs-Git: https://salsa.debian.org/med-team/qcumber.git
Homepage: https://gitlab.com/RKIBioinformaticsPipelines/QCumber
=====================================
debian/patches/set_absolute_path_to_tex_template.patch
=====================================
@@ -1,5 +1,5 @@
Author: Andreas Tille <TilleA at rki.de>
-Last-Update: Wed, 16 Mar 2016 11:01:55 +0100
+Last-Update: 2016-03-16
Description: Inside the Debian package we know exactly the location of the
tex template - make sure it will be found reliably
=====================================
debian/patches/yaml_load.patch
=====================================
@@ -1,6 +1,6 @@
Description: Replace deprecated yaml.load() by yaml.safe_load()
Author: Andreas Tille <tille at debian.org>
-Last-Update: Tue, 05 Apr 2022 10:16:12 +0200
+Last-Update: 2022-04-05
--- a/QCumber-2
+++ b/QCumber-2
=====================================
debian/po/es.po
=====================================
@@ -9,14 +9,14 @@ msgstr ""
"Report-Msgid-Bugs-To: qcumber at packages.debian.org\n"
"POT-Creation-Date: 2016-11-29 14:47+0100\n"
"PO-Revision-Date: 2023-05-12 16:17+0200\n"
+"Last-Translator: Camaleón <noelamac at gmail.com>\n"
"Language-Team: Debian Spanish <debian-l10n-spanish at lists.debian.org>\n"
+"Language: es\n"
"MIME-Version: 1.0\n"
"Content-Type: text/plain; charset=UTF-8\n"
"Content-Transfer-Encoding: 8bit\n"
"X-Generator: Poedit 2.4.2\n"
-"Last-Translator: Camaleón <noelamac at gmail.com>\n"
"Plural-Forms: nplurals=2; plural=(n != 1);\n"
-"Language: es\n"
#. Type: string
#. Description
@@ -37,10 +37,10 @@ msgid ""
"doc/qcumber/get-minikrakendb."
msgstr ""
"QCumber utiliza kraken por lo que necesita una base de datos. Para "
-"simplificar el proceso de creación de la base de datos, que requiere "
-"un uso intensivo de los recursos del sistema, puede descargar la base de "
-"datos (consulte «https://ccb.jhu.edu/software/kraken/»). Si quiere ejecutar "
-"QCumber, el programa necesita conocer la ubicación del directorio de la "
-"base de datos de kraken. Introduzca el directorio donde se encuentra "
-"instalada la base de datos o si se debe instalar la base de datos "
-"utilizando el guión «/usr/share/doc/qcumber/get-minikrakendb»."
+"simplificar el proceso de creación de la base de datos, que requiere un uso "
+"intensivo de los recursos del sistema, puede descargar la base de datos "
+"(consulte «https://ccb.jhu.edu/software/kraken/»). Si quiere ejecutar "
+"QCumber, el programa necesita conocer la ubicación del directorio de la base "
+"de datos de kraken. Introduzca el directorio donde se encuentra instalada la "
+"base de datos o si se debe instalar la base de datos utilizando el guión «/"
+"usr/share/doc/qcumber/get-minikrakendb»."
=====================================
debian/po/ru.po
=====================================
@@ -9,15 +9,15 @@ msgstr ""
"Report-Msgid-Bugs-To: qcumber at packages.debian.org\n"
"POT-Creation-Date: 2016-11-29 14:47+0100\n"
"PO-Revision-Date: 2017-12-01 17:30+0500\n"
+"Last-Translator: Lev Lamberov <dogsleg at debian.org>\n"
"Language-Team: \n"
+"Language: ru\n"
"MIME-Version: 1.0\n"
"Content-Type: text/plain; charset=UTF-8\n"
"Content-Transfer-Encoding: 8bit\n"
"X-Generator: Poedit 2.0.4\n"
-"Last-Translator: Lev Lamberov <dogsleg at debian.org>\n"
-"Plural-Forms: nplurals=3; plural=(n%10==1 && n%100!=11 ? 0 : n%10>=2 && n"
-"%10<=4 && (n%100<10 || n%100>=20) ? 1 : 2);\n"
-"Language: ru\n"
+"Plural-Forms: nplurals=3; plural=(n%10==1 && n%100!=11 ? 0 : n%10>=2 && "
+"n%10<=4 && (n%100<10 || n%100>=20) ? 1 : 2);\n"
#. Type: string
#. Description
@@ -37,11 +37,10 @@ msgid ""
"is installed or should the database be installed by the script /usr/share/"
"doc/qcumber/get-minikrakendb."
msgstr ""
-"QCumber использует kraken, для которого требуется база данных. Для "
-"упрощения процесса создания базы данных, для которого требуется большое "
-"количество вычислительных ресурсов, можно просто скачать эту базу данных "
-"(см. https://ccb.jhu.edu/software/kraken/). Если вы хотите запустить "
-"QCumber, то программе должно быть известно, в каком каталоге расположена "
-"база данных kraken. Введите каталог, в котором база данных уже установлена, "
-"либо должна быть установлена с помощью сценария /usr/share/doc/qcumber/get-"
-"minikrakendb."
+"QCumber использует kraken, для которого требуется база данных. Для упрощения "
+"процесса создания базы данных, для которого требуется большое количество "
+"вычислительных ресурсов, можно просто скачать эту базу данных (см. https://"
+"ccb.jhu.edu/software/kraken/). Если вы хотите запустить QCumber, то "
+"программе должно быть известно, в каком каталоге расположена база данных "
+"kraken. Введите каталог, в котором база данных уже установлена, либо должна "
+"быть установлена с помощью сценария /usr/share/doc/qcumber/get-minikrakendb."
=====================================
debian/source/lintian-overrides
=====================================
@@ -1,5 +1,5 @@
# False Positives
qcumber source: source-is-missing .pc*
-qcumber source: source-contains-prebuilt-javascript-object .pc*
+qcumber source: source-contains-prebuilt-javascript-object [.pc*]
qcumber source: very-long-line-length-in-source-file .pc*
qcumber source: embedded-script-includes-copyright-statement .pc*
=====================================
debian/watch
=====================================
@@ -1,3 +1,4 @@
-version=4
-opts=filenamemangle=s/.*\/archive\/(\d\S+)\/QCumber.*\.tar\.gz/QCumber-$1\.tar\.gz/g \
- https://gitlab.com/RKIBioinformaticsPipelines/QCumber/-/tags .*/archive/.*/QCumber- at ANY_VERSION@.tar.gz
+Version: 5
+
+Template: Gitlab
+Dist: https://gitlab.com/RKIBioinformaticsPipelines/QCumber
View it on GitLab: https://salsa.debian.org/med-team/qcumber/-/compare/3a8f3720ff299c4b7ff4e43b5eb2e93bd568c324...9a3f7e3700716506c18179c2002a863df5bf2a84
--
View it on GitLab: https://salsa.debian.org/med-team/qcumber/-/compare/3a8f3720ff299c4b7ff4e43b5eb2e93bd568c324...9a3f7e3700716506c18179c2002a863df5bf2a84
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