[med-svn] [Git][med-team/vg][master] Update TODO

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / vg


Commits:
43ef30a1 by Andreas Tille at 2026-10-25T16:59:31+01:00
Update TODO

- - - - -


1 changed file:

- debian/deps-to-package.md


Changes:

=====================================
debian/deps-to-package.md
=====================================
@@ -18,38 +18,38 @@ independent of each other and can be worked on in parallel.
 
 1. **libsdsl** — DONE (2.4). The existing Debian package was updated; vg no
    longer needs the vgteam snapshot.
-2. **libsonlib** — Done (in NEW).
+2. **libsonlib** — Done.
    https://github.com/benedictpaten/sonLib
 3. **libgbwt** — Done
    https://github.com/jltsiren/gbwt
 4. **libgcsa2** — Done
    https://github.com/jltsiren/gcsa2
-5. **libhandlegraph** — Done (in NEW).
+5. **libhandlegraph** — Done
    https://github.com/vgteam/libhandlegraph
    (upstream HEAD 2026-10-21: `3d8c3c9b1e3f`)
 6. **libstructures** — Done.
    https://github.com/vgteam/structures
    (upstream HEAD 2026-10-21: `391e4f70074d`)
-7. **libgssw** — Done (in NEW)
+7. **libgssw** — Done
    https://github.com/vgteam/gssw
    (upstream HEAD 2026-10-21: `14b4d43736bb`)
-8. **libdozeu** — Done (in NEW)
+8. **libdozeu** — Done
    https://github.com/vgteam/dozeu
    (upstream HEAD 2026-10-21: `d0e9ba6c0833`)
 9. **libdynamic** — Done in xxsds-dynamic buy using HopscotchMap.patch
    instead of https://github.com/vgteam/DYNAMIC
-10. **cpp-progress-bar** — Done (in NEW)
+10. **cpp-progress-bar** — Done
     https://github.com/vgteam/cpp_progress_bar
     (upstream HEAD 2026-10-21: `487bb7c9c5f0`)
-
-### Group 1: foundational and independent libraries
-
-11. **libkff** (kff-cpp-api) — no dependencies beyond the C++ standard
+11. **libkff** (kff-cpp-api) — Done (in NEW)
     library. https://github.com/Kmer-File-Format/kff-cpp-api
     (upstream HEAD 2026-10-21: `cf4d866405a0`)
-12. **libgfaz** — needs libzstd and OpenMP; no dependency on the other new
+12. **libgfaz** — Done (in NEW)
     packages. https://github.com/babyplutokurt/GFAz
     (upstream HEAD 2026-10-21: `f1c1b7feab80`)
+
+### Group 1: foundational and independent libraries
+
 13. **libsublinear-ls** — needs htslib, liblzma, libbz2 and zlib, all already
     packaged. https://github.com/yoheirosen/sublinear-Li-Stephens
     (upstream HEAD 2026-10-21: `602b9e9f1913`)



View it on GitLab: https://salsa.debian.org/med-team/vg/-/commit/43ef30a11a8375cce63ddb16d02596b3c69a0853

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View it on GitLab: https://salsa.debian.org/med-team/vg/-/commit/43ef30a11a8375cce63ddb16d02596b3c69a0853
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