[med-svn] [Git][med-team/vg][master] Update TODO

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / vg


Commits:
63ceeea0 by Andreas Tille at 2026-10-26T19:56:28+01:00
Update TODO

- - - - -


1 changed file:

- debian/deps-to-package.md


Changes:

=====================================
debian/deps-to-package.md
=====================================
@@ -41,29 +41,29 @@ independent of each other and can be worked on in parallel.
 10. **cpp-progress-bar** — Done
     https://github.com/vgteam/cpp_progress_bar
     (upstream HEAD 2026-10-21: `487bb7c9c5f0`)
-11. **libkff** (kff-cpp-api) — Done (in NEW)
+11. **libkff** (kff-cpp-api) — Done
     library. https://github.com/Kmer-File-Format/kff-cpp-api
     (upstream HEAD 2026-10-21: `cf4d866405a0`)
-12. **libgfaz** — Done (in NEW)
+12. **gfaz** — Done
     packages. https://github.com/babyplutokurt/GFAz
     (upstream HEAD 2026-10-21: `f1c1b7feab80`)
+14. **libpinchesandcacti** — Done (in NEW)
+    externalTools. https://github.com/benedictpaten/pinchesAndCacti
+    (upstream HEAD 2026-10-21: `67138b54ccf4`)
+15. **libssw** — Done
+    bump for the latest version 1.2.5
+16. **libgbwtgraph** — Done (in NEW)
+    (upstream HEAD 2026-10-21: `d566db9df177`)
 
 ### Group 1: foundational and independent libraries
 
 13. **libsublinear-ls** — needs htslib, liblzma, libbz2 and zlib, all already
     packaged. https://github.com/yoheirosen/sublinear-Li-Stephens
     (upstream HEAD 2026-10-21: `602b9e9f1913`)
-14. **libpinchesandcacti** — after libsonlib; builds 3EdgeConnected in its own
-    externalTools. https://github.com/benedictpaten/pinchesAndCacti
-    (upstream HEAD 2026-10-21: `67138b54ccf4`)
-15. **libssw** — already packaged in Debian. See the libssw note below; do not
-    create a second `libssw` package for the vg fork.
+    Problem: Non-free, see https://github.com/yoheirosen/sublinear-Li-Stephens/issues/14
 
 ### Group 2: vg-specific libraries
 
-16. **libgbwtgraph** — after libgbwt, libhandlegraph and libsdsl; also needs
-    OpenSSL and zstd. https://github.com/jltsiren/gbwtgraph
-    (upstream HEAD 2026-10-21: `d566db9df177`)
 17. **libbdsg** — after libhandlegraph and libdynamic; needs sdsl, jansson,
     Boost and several already packaged header libraries.
     https://github.com/vgteam/libbdsg



View it on GitLab: https://salsa.debian.org/med-team/vg/-/commit/63ceeea08cf70beec100face8ac1b18ef467831f

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View it on GitLab: https://salsa.debian.org/med-team/vg/-/commit/63ceeea08cf70beec100face8ac1b18ef467831f
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