[med-svn] [Git][med-team/vcftools][master] 7 commits: Standards-Version: 4.7.4 (routine-update)
Andreas Tille (@tille)
gitlab at salsa.debian.org
Mon Oct 26 14:19:46 GMT 2026
Andreas Tille pushed to branch master at Debian Med / vcftools
Commits:
c09fb4d2 by Andreas Tille at 2026-10-26T14:38:25+01:00
Standards-Version: 4.7.4 (routine-update)
- - - - -
681d2c59 by Andreas Tille at 2026-10-26T14:38:35+01:00
Changes made by cme
- - - - -
86733a92 by Andreas Tille at 2026-10-26T14:38:38+01:00
Drop 'Rules-Requires-Root: no' from d/control (routine-update)
- - - - -
bf560828 by Andreas Tille at 2026-10-26T14:38:43+01:00
Reformat the Last-Update date as ISO YYYY-MM-DD.
Changes-By: lintian-brush
Fixes: lintian: source: invalid-dep3-format-patch-wrong-last-update [debian/patches/spelling.patch]
Fixes: lintian: source: invalid-dep3-format-patch-wrong-last-update [debian/patches/manpage.patch]
See-also: https://lintian.debian.org/tags/invalid-dep3-format-patch-wrong-last-update.html
- - - - -
8f566302 by Andreas Tille at 2026-10-26T14:38:45+01:00
Set upstream metadata fields: Archive.
Changes-By: lintian-brush
- - - - -
abb78e44 by Andreas Tille at 2026-10-26T14:47:53+01:00
d/copyright: Add missing license statements; d/lrc.config: Added
- - - - -
6aa13a9a by Andreas Tille at 2026-10-26T14:49:49+01:00
Upload to unstable
- - - - -
7 changed files:
- debian/changelog
- debian/control
- debian/copyright
- + debian/lrc.config
- debian/patches/manpage.patch
- debian/patches/spelling.patch
- debian/upstream/metadata
Changes:
=====================================
debian/changelog
=====================================
@@ -1,14 +1,24 @@
-vcftools (0.1.17-2) UNRELEASED; urgency=medium
+vcftools (0.1.17-2) unstable; urgency=medium
[ Andreas Tille ]
* Replace pkg-config with pkgconf in Build-Depends
* d/watch: version=5
+ * Standards-Version: 4.7.4 (routine-update)
+ * Reflow Uploaders field (cme)
+ * Remove Priority field (cme)
+ * Drop 'Rules-Requires-Root: no' from d/control (routine-update)
+ * d/copyright: Add missing license statements
+ * d/lrc.config: Added
[ Roland Rosenfeld ]
* Fix possible attempt to escape whitespace in qw() list with Perl 5.44
Closes: #1151888
- -- Andreas Tille <tille at debian.org> Tue, 10 Mar 2026 09:46:28 +0100
+ [ Andreas Tille ]
+ * Reformat the Last-Update date as ISO YYYY-MM-DD.
+ * Set upstream metadata fields: Archive.
+
+ -- Andreas Tille <tille at debian.org> Mon, 26 Oct 2026 14:47:59 +0100
vcftools (0.1.17-1) unstable; urgency=medium
=====================================
debian/control
=====================================
@@ -1,24 +1,26 @@
Source: vcftools
+Standards-Version: 4.7.4
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Thorsten Alteholz <debian at alteholz.de>,
- Andreas Tille <tille at debian.org>
+Uploaders:
+ Thorsten Alteholz <debian at alteholz.de>,
+ Andreas Tille <tille at debian.org>,
Section: science
-Priority: optional
-Build-Depends: debhelper-compat (= 13),
- pkgconf,
- zlib1g-dev
-Standards-Version: 4.7.2
+Build-Depends:
+ debhelper-compat (= 14),
+ pkgconf,
+ zlib1g-dev,
Vcs-Browser: https://salsa.debian.org/med-team/vcftools
Vcs-Git: https://salsa.debian.org/med-team/vcftools.git
Homepage: https://vcftools.github.io/
-Rules-Requires-Root: no
Package: vcftools
Architecture: any
-Depends: ${shlibs:Depends},
- ${misc:Depends},
- ${perl:Depends}
-Recommends: tabix
+Depends:
+ ${misc:Depends},
+ ${perl:Depends},
+ ${shlibs:Depends},
+Recommends:
+ tabix,
Description: Collection of tools to work with VCF files
VCFtools is a program package designed for working with VCF files, such as
those generated by the 1000 Genomes Project. The aim of VCFtools is to
=====================================
debian/copyright
=====================================
@@ -9,6 +9,17 @@ Copyright: 2009 - 2011, Adam Auton (cpp)
2009 - 2011, Petr Danecek (perl)
License: GPL-3
+Files: src/cpp/bgzf.*
+ src/cpp/khash.h
+Copyright: 2008 Broad Institute / Massachusetts Institute of Technology
+ 2011 Attractive Chaos <attractor at live.co.uk>
+License: MIT
+
+Files: src/cpp/knetfile.c
+Copyright: 2008 by Genome Research Ltd (GRL).
+ 2010 by Attractive Chaos <attractor at live.co.uk>
+License: MIT
+
Files: debian/*
Copyright: 2011 Thorsten Alteholz <debian at alteholz.de>
License: GPL-3
@@ -30,3 +41,22 @@ License: GPL-3
On Debian systems, the complete text of the GNU General
Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".
+License: MIT
+ Permission is hereby granted, free of charge, to any person obtaining a copy
+ of this software and associated documentation files (the "Software"), to deal
+ in the Software without restriction, including without limitation the rights
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+ copies of the Software, and to permit persons to whom the Software is
+ furnished to do so, subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included in
+ all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+ THE SOFTWARE.
+
=====================================
debian/lrc.config
=====================================
@@ -0,0 +1,2 @@
+build-aux/git-version-gen
+LICENSE
=====================================
debian/patches/manpage.patch
=====================================
@@ -1,5 +1,5 @@
Author: Andreas Tille <tille at debian.org>
-Last-Update: Sun, 03 Jul 2016 22:13:17 +0200
+Last-Update: 2016-07-03
Description: Fix manpage syntax
--- a/src/cpp/vcftools.1
=====================================
debian/patches/spelling.patch
=====================================
@@ -1,5 +1,5 @@
Author: Andreas Tille <tille at debian.org>
-Last-Update: Sun, 03 Jul 2016 22:13:17 +0200
+Last-Update: 2016-07-03
Description: Fix spelling
--- a/src/cpp/variant_file_output.cpp
=====================================
debian/upstream/metadata
=====================================
@@ -1,3 +1,4 @@
+Archive: SourceForge
Bug-Database: https://github.com/vcftools/vcftools/issues
Bug-Submit: https://github.com/vcftools/vcftools/issues/new
Reference:
View it on GitLab: https://salsa.debian.org/med-team/vcftools/-/compare/3e2177b106299f5a17c7b9c3ab0b0a30f04ad9fe...6aa13a9af562abec7546815a7f41cb96825577b9
--
View it on GitLab: https://salsa.debian.org/med-team/vcftools/-/compare/3e2177b106299f5a17c7b9c3ab0b0a30f04ad9fe...6aa13a9af562abec7546815a7f41cb96825577b9
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