[med-svn] [Git][med-team/pilon][master] 2 commits: Rebuild against Scala 2.12

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / pilon


Commits:
1653dc82 by Juan Manuel Méndez Rey at 2026-10-02T02:38:24+02:00
Rebuild against Scala 2.12

- - - - -
ea402c16 by Andreas Tille at 2026-10-26T15:21:13+01:00
Merge branch 'scala-2.12' into 'master'

Rebuild against Scala 2.12

See merge request med-team/pilon!1
- - - - -


3 changed files:

- debian/changelog
- debian/control
- debian/manifest


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,14 @@
+pilon (1.24-5) UNRELEASED; urgency=medium
+
+  * Team upload.
+  * Rebuild against Scala 2.12 (#1142168): Build-Depends on scala (>=
+    2.12~), Depends on scala-library (>= 2.12~), and put the scala-
+    library-2.12.jar series link on the manifest Class-Path, since jars
+    built with one Scala series are not binary compatible with another.
+    The existing build_with_scala2_11.patch also covers 2.12.
+
+ -- Juan Manuel Méndez Rey <juan.mendezr at proton.me>  Fri, 02 Oct 2026 02:38:24 +0200
+
 pilon (1.24-4) unstable; urgency=medium
 
   * Raising Standards version to 4.7.0 (no change)


=====================================
debian/control
=====================================
@@ -6,7 +6,7 @@ Section: science
 Priority: optional
 Build-Depends: debhelper-compat (= 13),
                javahelper,
-               scala,
+               scala (>= 2.12~),
                libhtsjdk-java
 Standards-Version: 4.7.0
 Vcs-Browser: https://salsa.debian.org/med-team/pilon
@@ -21,7 +21,7 @@ Depends: ${misc:Depends},
          java-wrappers,
          libhtsjdk-java,
          libcommons-lang-java,
-         scala-library
+         scala-library (>= 2.12~)
 Conflicts: pilon-non-free
 Replaces: pilon-non-free
 Description: automated genome assembly improvement and variant detection tool


=====================================
debian/manifest
=====================================
@@ -1,4 +1,4 @@
 usr/share/java/pilon.jar:
     Main-Class: org.broadinstitute.pilon.Pilon
     Manifest-Version: 1.0
-    Class-Path: /usr/share/java/htsjdk.jar /usr/share/java/scala-library.jar /usr/share/java/commons-lang.jar
+    Class-Path: /usr/share/java/htsjdk.jar /usr/share/java/scala-library-2.12.jar /usr/share/java/commons-lang.jar



View it on GitLab: https://salsa.debian.org/med-team/pilon/-/compare/87648b13b3a8d61671f534f7146d8161c9eaa37a...ea402c16bb5b401ef995510e5e7d6a741d2e96b6

-- 
View it on GitLab: https://salsa.debian.org/med-team/pilon/-/compare/87648b13b3a8d61671f534f7146d8161c9eaa37a...ea402c16bb5b401ef995510e5e7d6a741d2e96b6
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