[med-svn] [Git][med-team/libsbml][master] Refresh patches

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / libsbml


Commits:
18a10478 by Andreas Tille at 2026-09-19T11:41:48+02:00
Refresh patches

- - - - -


2 changed files:

- debian/patches/0001-Use-system-minizip-cmake.patch
- debian/patches/make-shuffle.patch


Changes:

=====================================
debian/patches/0001-Use-system-minizip-cmake.patch
=====================================
@@ -10,11 +10,9 @@ Subject: [PATCH 1/5] Use system minizip cmake
  src/sbml/compress/zipfstream.h   | 12 ++++++------
  3 files changed, 19 insertions(+), 24 deletions(-)
 
-diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
-index 5abfa21314..10f0d42490 100644
 --- a/src/CMakeLists.txt
 +++ b/src/CMakeLists.txt
-@@ -318,14 +318,6 @@ endif()
+@@ -315,14 +315,6 @@ endif()
  if(WITH_ZLIB)
  
  set(COMPRESS_SOURCES ${COMPRESS_SOURCES}
@@ -29,7 +27,7 @@ index 5abfa21314..10f0d42490 100644
          sbml/compress/zfstream.h
          sbml/compress/zfstream.cpp
          sbml/compress/zipfstream.cpp
-@@ -344,7 +336,10 @@ set(COMPRESS_SOURCES ${COMPRESS_SOURCES}
+@@ -341,7 +333,10 @@ set(COMPRESS_SOURCES ${COMPRESS_SOURCES}
          )
      endif()
  
@@ -41,8 +39,6 @@ index 5abfa21314..10f0d42490 100644
  
  endif()
  
-diff --git a/src/sbml/compress/zipfstream.cpp b/src/sbml/compress/zipfstream.cpp
-index 35f2d5ed31..1ccd83618b 100644
 --- a/src/sbml/compress/zipfstream.cpp
 +++ b/src/sbml/compress/zipfstream.cpp
 @@ -44,10 +44,10 @@
@@ -67,7 +63,7 @@ index 35f2d5ed31..1ccd83618b 100644
  
  /*****************************************************************************/
  
-@@ -547,7 +547,7 @@ zipFile zipopen (const char* path, const char* filenameinzip, int append)
+@@ -547,7 +547,7 @@ zipFile zipopen (const char* path, const
      err = zipOpenNewFileInZip(zf,filenameinzip,&zi,
                       NULL,0,NULL,0,NULL,
                       Z_DEFLATED,
@@ -102,7 +98,7 @@ index 35f2d5ed31..1ccd83618b 100644
  {
    int ret = 0;
    {
-@@ -643,7 +643,7 @@ uLong filetime(const char* f, tm_zip* tmzip, uLong *dt)
+@@ -643,7 +643,7 @@ uLong filetime(const char* f, tm_zip* tm
  }
  #else
  #if defined(unix) || defined(MACOSX)
@@ -111,7 +107,7 @@ index 35f2d5ed31..1ccd83618b 100644
  {
    int ret=0;
    struct stat s;        /* results of stat() */
-@@ -682,7 +682,7 @@ uLong filetime(const char* f, tm_zip* tmzip, uLong *dt)
+@@ -682,7 +682,7 @@ uLong filetime(const char* f, tm_zip* tm
    return ret;
  }
  #else
@@ -120,8 +116,6 @@ index 35f2d5ed31..1ccd83618b 100644
  {
      return 0;
  }
-diff --git a/src/sbml/compress/zipfstream.h b/src/sbml/compress/zipfstream.h
-index c0fa983823..8bc159fa10 100644
 --- a/src/sbml/compress/zipfstream.h
 +++ b/src/sbml/compress/zipfstream.h
 @@ -44,10 +44,10 @@


=====================================
debian/patches/make-shuffle.patch
=====================================
@@ -14,7 +14,8 @@ Bug-Debian: https://bugs.debian.org/1105459
 
 --- a/docs/CMakeLists.txt
 +++ b/docs/CMakeLists.txt
-@@ -240,5 +240,6 @@
+@@ -239,6 +239,7 @@ if (WITH_PYTHON)
+ 		WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/src
  		COMMENT "Generate libsbml.py"
  		DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/CMakeLists.txt
 +				${CMAKE_CURRENT_BINARY_DIR}/../src/bindings/python/libsbml-doxygen.py
@@ -23,8 +24,7 @@ Bug-Debian: https://bugs.debian.org/1105459
  		${CMAKE_CURRENT_SOURCE_DIR}/src/libsbml.py)
 --- a/src/bindings/python/CMakeLists.txt
 +++ b/src/bindings/python/CMakeLists.txt
-@@ -173,6 +173,7 @@
-     OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/libsbml_wrap.cpp
+@@ -174,6 +174,7 @@ add_custom_command(
          ${CMAKE_CURRENT_BINARY_DIR}/libsbml.py
          ${CMAKE_CURRENT_BINARY_DIR}/class-list.txt
          ${CMAKE_CURRENT_BINARY_DIR}/libsbml-converters.txt



View it on GitLab: https://salsa.debian.org/med-team/libsbml/-/commit/18a10478e4395051653b5181a2842c0dfc6c97d9

-- 
View it on GitLab: https://salsa.debian.org/med-team/libsbml/-/commit/18a10478e4395051653b5181a2842c0dfc6c97d9
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