[med-svn] [Git][med-team/seqtools][master] 4 commits: DEP3
Andreas Tille (@tille)
gitlab at salsa.debian.org
Sun Sep 20 17:11:16 BST 2026
Andreas Tille pushed to branch master at Debian Med / seqtools
Commits:
1e0e5741 by Andreas Tille at 2026-09-20T17:31:36+02:00
DEP3
- - - - -
c67dc4cf by Andreas Tille at 2026-09-20T17:33:41+02:00
d/watch:
- version=5
- s/ftp:/https:/
- - - - -
6ef8d009 by Andreas Tille at 2026-09-20T17:34:33+02:00
cme fix dpkg-control
- - - - -
0e080a24 by Andreas Tille at 2026-09-20T17:38:25+02:00
Upload to unstable
- - - - -
5 changed files:
- debian/changelog
- debian/control
- debian/copyright
- debian/patches/gtk3-port.patch
- debian/watch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,11 +1,15 @@
-seqtools (4.44.1+dfsg-9) UNRELEASED; urgency=medium
+seqtools (4.44.1+dfsg-9) unstable; urgency=medium
* Port applications and library to GTK3.
Closes: #967743
* Reformat the Last-Update date as ISO YYYY-MM-DD.
* Update standards version to 4.7.4, no changes needed.
+ * d/watch:
+ - version=5
+ - s/ftp:/https:/
+ * cme fix dpkg-control
- -- Andreas Tille <tille at debian.org> Sun, 20 Sep 2026 06:56:15 +0200
+ -- Andreas Tille <tille at debian.org> Sun, 20 Sep 2026 17:34:40 +0200
seqtools (4.44.1+dfsg-8) unstable; urgency=medium
=====================================
debian/control
=====================================
@@ -1,27 +1,34 @@
Source: seqtools
+Standards-Version: 4.7.4
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Andreas Tille <tille at debian.org>
+Uploaders:
+ Andreas Tille <tille at debian.org>,
Section: science
-Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13),
- libgtk-3-dev,
- libsqlite3-dev,
- libcurl4-openssl-dev | libcurl4-dev,
- libjsoncpp-dev,
- d-shlibs (>= 0.106),
-Standards-Version: 4.7.4
+Build-Depends:
+ dpkg-dev (>= 1.22.5),
+ debhelper-compat (= 14),
+ libgtk-3-dev,
+ libsqlite3-dev,
+ libcurl4-openssl-dev | libcurl4-dev,
+ libjsoncpp-dev,
+ d-shlibs (>= 0.106),
Vcs-Browser: https://salsa.debian.org/med-team/seqtools
Vcs-Git: https://salsa.debian.org/med-team/seqtools.git
Homepage: https://www.sanger.ac.uk/science/tools/seqtools
Package: libgbtools0t64
-Provides: ${t64:Provides}
-Replaces: libgbtools0
-Conflicts: libgbtools0 (<< 4.44.1+dfsg-7.1)
Architecture: any
Multi-Arch: same
Section: libs
-Depends: ${shlibs:Depends},
- ${misc:Depends}
+Depends:
+ ${shlibs:Depends},
+ ${misc:Depends},
+Conflicts:
+ libgbtools0 (<< 4.44.1+dfsg-7.1),
+Provides:
+ ${t64:Provides},
+Replaces:
+ libgbtools0,
Description: library for visualising sequence alignments
The SeqTools package contains three tools for visualising sequence
alignments: Blixem, Dotter and Belvu.
@@ -32,9 +39,10 @@ Package: libgbtools-dev
Architecture: any
Multi-Arch: same
Section: libdevel
-Depends: libgbtools0t64 (= ${binary:Version}),
- ${devlibs:Depends},
- ${misc:Depends}
+Depends:
+ libgbtools0t64 (= ${binary:Version}),
+ ${devlibs:Depends},
+ ${misc:Depends},
Description: library for visualising sequence alignments (devel)
The SeqTools package contains three tools for visualising sequence
alignments: Blixem, Dotter and Belvu.
@@ -43,9 +51,11 @@ Description: library for visualising sequence alignments (devel)
Package: belvu
Architecture: any
-Depends: ${shlibs:Depends},
- ${misc:Depends}
-Provides: acedb-other-belvu
+Depends:
+ ${shlibs:Depends},
+ ${misc:Depends},
+Provides:
+ acedb-other-belvu,
Description: multiple sequence alignment viewer and phylogenetic tool
Belvu is a multiple sequence alignment viewer and phylogenetic tool with
an extensive set of user-configurable modes to color residues.
@@ -80,8 +90,9 @@ Description: multiple sequence alignment viewer and phylogenetic tool
Package: blixem
Architecture: any
-Depends: ${shlibs:Depends},
- ${misc:Depends}
+Depends:
+ ${shlibs:Depends},
+ ${misc:Depends},
Description: interactive browser of sequence alignments
Blixem is an interactive browser of sequence alignments that have been
stacked up in a "master-slave" multiple alignment; it is not a 'true'
@@ -106,9 +117,11 @@ Description: interactive browser of sequence alignments
Package: dotter
Architecture: any
-Depends: ${shlibs:Depends},
- ${misc:Depends}
-Provides: acedb-other-dotter
+Depends:
+ ${shlibs:Depends},
+ ${misc:Depends},
+Provides:
+ acedb-other-dotter,
Description: detailed comparison of two genomic sequences
Dotter is a graphical dot-matrix program for detailed comparison of two
sequences.
=====================================
debian/copyright
=====================================
@@ -1,6 +1,6 @@
Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: SeqTools
-Source: ftp://ftp.sanger.ac.uk/pub/resources/software/seqtools/PRODUCTION/
+Source: https://ftp.sanger.ac.uk/pub/resources/software/seqtools/PRODUCTION/
Files-Excluded: */blatSrc
*/jsoncpp
*/json
=====================================
debian/patches/gtk3-port.patch
=====================================
@@ -1,5 +1,8 @@
-Index: belvuApp/belvu.cpp
-===================================================================
+Author: Andreas Tille <tille at debian.org> by using https://inference.debian.net/ Model DeepSeek V4 Flash 0731
+Last-Update: 2026-09-26
+Bug-Debian: https://bugs.debian.org/967743
+Description: Port from deprecated GTK2 to GTK3
+
--- a/belvuApp/belvu.cpp
+++ b/belvuApp/belvu.cpp
@@ -2648,7 +2648,7 @@ char b2aIndex(const int idx)
=====================================
debian/watch
=====================================
@@ -1,4 +1,6 @@
-version=4
+Version: 5
-opts="passive,repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \
- ftp://ftp.sanger.ac.uk/pub/resources/software/seqtools/PRODUCTION/seqtools-@ANY_VERSION@@ARCHIVE_EXT@
+Source: https://ftp.sanger.ac.uk/pub/resources/software/seqtools/PRODUCTION/
+Matching-Pattern: @PACKAGE at -@ANY_VERSION@@ARCHIVE_EXT@
+Dversionmangle: auto
+Repacksuffix: +dfsg
View it on GitLab: https://salsa.debian.org/med-team/seqtools/-/compare/de00b3d6a146d86f74a4eedf8fb85bc1125d8c14...0e080a24586a42302c72985885b12d35d7c885ad
--
View it on GitLab: https://salsa.debian.org/med-team/seqtools/-/compare/de00b3d6a146d86f74a4eedf8fb85bc1125d8c14...0e080a24586a42302c72985885b12d35d7c885ad
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