[med-svn] [Git][med-team/cufflinks][upstream] New upstream version 2.2.1+git20190706.dc3b0cb+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / cufflinks


Commits:
26379120 by Andreas Tille at 2026-09-20T21:37:49+02:00
New upstream version 2.2.1+git20190706.dc3b0cb+dfsg
- - - - -


51 changed files:

- + .gitignore
- AUTHORS
- − README
- + README.md
- ax_bam.m4
- ax_boost_base.m4
- + ax_boost_filesystem.m4
- ax_boost_serialization.m4
- ax_boost_system.m4
- ax_boost_thread.m4
- ax_check_eigen.m4
- configure.ac
- + index.md
- src/GArgs.cpp
- src/GArgs.h
- src/GBase.cpp
- src/GBase.h
- src/GFastaIndex.cpp
- src/GHash.hh
- src/GList.hh
- src/GVec.hh
- src/Makefile.am
- src/abundances.cpp
- src/biascorrection.cpp
- src/biascorrection.h
- src/bundles.cpp
- src/bundles.h
- src/clustering.h
- src/common.cpp
- src/common.h
- src/cuffcompare.cpp
- src/cuffdiff.cpp
- src/cuffdiff_to_gct.py
- src/cufflinks.cpp
- src/cuffmerge
- src/cuffnorm.cpp
- src/cuffquant.cpp
- src/differential.cpp
- src/differential.h
- src/filters.cpp
- src/gff.cpp
- src/gff.h
- src/gtf_reads.cpp
- src/gtf_tracking.h
- src/hits.cpp
- src/hits.h
- src/lemon/error.h
- src/replicates.cpp
- src/replicates.h
- src/transitive_closure.h
- src/update_check.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/cufflinks/-/commit/2637912004ae146eb1f92d5bc51d1b2e285c922a

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View it on GitLab: https://salsa.debian.org/med-team/cufflinks/-/commit/2637912004ae146eb1f92d5bc51d1b2e285c922a
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