[med-svn] [Git][med-team/libbio-db-hts-perl][master] 8 commits: Point watch file to Github since there is a new tag which is missing at CPAN

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / libbio-db-hts-perl


Commits:
edaf668a by Andreas Tille at 2026-09-21T13:39:21+02:00
Point watch file to Github since there is a new tag which is missing at CPAN

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02e02588 by Andreas Tille at 2026-09-21T13:39:48+02:00
New upstream version

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49f4b317 by Andreas Tille at 2026-09-21T13:39:49+02:00
New upstream version 3.02
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e1400839 by Andreas Tille at 2026-09-21T13:40:05+02:00
Update upstream source from tag 'upstream/3.02'

Update to upstream version '3.02'
with Debian dir 5338bef31d8ba3f4fb3e139b9ea34d1038f6bc32
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7c1d2980 by Andreas Tille at 2026-09-21T13:40:06+02:00
Standards-Version: 4.7.4 (routine-update)

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4daad3ae by Andreas Tille at 2026-09-21T13:40:10+02:00
Changes made by cme

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5eb5f51d by Andreas Tille at 2026-09-21T13:40:27+02:00
debputy lint --auto-fix (routine-update)

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dcb62ddf by Andreas Tille at 2026-09-21T13:57:39+02:00
Seems patch can be deactivated with latest upstream

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55 changed files:

- + .gitignore
- + .travis.yml
- Build.PL
- Changes
- − DISCLAIMER
- INSTALL.pl
- LICENSE
- + MANIFEST.SKIP
- META.json
- META.yml
- README
- cpanfile
- debian/changelog
- debian/control
- debian/patches/series
- debian/watch
- lib/Bio/DB/HTS.pm
- lib/Bio/DB/HTS.xs
- lib/Bio/DB/HTS/AlignWrapper.pm
- lib/Bio/DB/HTS/Alignment.pm
- lib/Bio/DB/HTS/Constants.pm
- lib/Bio/DB/HTS/Faidx.pm
- lib/Bio/DB/HTS/Faidx.xs
- lib/Bio/DB/HTS/FetchIterator.pm
- lib/Bio/DB/HTS/Kseq.pm
- lib/Bio/DB/HTS/Kseq/Iterator.pod
- lib/Bio/DB/HTS/Kseq/Record.pm
- lib/Bio/DB/HTS/Pileup.pm
- lib/Bio/DB/HTS/PileupWrapper.pm
- lib/Bio/DB/HTS/Query.pm
- lib/Bio/DB/HTS/ReadIterator.pm
- lib/Bio/DB/HTS/Segment.pm
- lib/Bio/DB/HTS/Tabix.pm
- lib/Bio/DB/HTS/Tabix/Iterator.pm
- lib/Bio/DB/HTS/Target.pm
- lib/Bio/DB/HTS/VCF.pm
- lib/Bio/DB/HTS/VCF/Header.pm
- lib/Bio/DB/HTS/VCF/HeaderPtr.pm
- lib/Bio/DB/HTS/VCF/Iterator.pm
- lib/Bio/DB/HTS/VCF/Row.pm
- lib/Bio/DB/HTS/VCF/RowPtr.pm
- scripts/build_options.sh
- scripts/convert_gz_2_bgz.sh
- t/00load.t
- t/01bam.t
- t/02faidx.t
- t/03cram.t
- t/04tabix.t
- t/05vcf.t
- t/06kseq.t
- t/07cramwrite.t
- t/08bamwrite.t
- t/09sam.t
- t/10leak.t
- + travisci/harness.sh


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/libbio-db-hts-perl/-/compare/cce1e80dfd4cd23b52f2c58e6d883789a00a8b47...dcb62ddf67b3817fdc4970739ab89878d103a945

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View it on GitLab: https://salsa.debian.org/med-team/libbio-db-hts-perl/-/compare/cce1e80dfd4cd23b52f2c58e6d883789a00a8b47...dcb62ddf67b3817fdc4970739ab89878d103a945
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