[Debian-med-packaging] Bug#668123: bowtie2: FTBFS: cc1plus: error: unrecognized command line option '-m32'

[Nobuhiro Iwamatsu]

Source: bowtie2
Version: 2.0.0-beta5-1
Severity: serious
Justification: fails to build from source

Hi,

bowtie2 has failed in building by the architecture other than i386* and amd64*.

 https://buildd.debian.org/status/package.php?p=bowtie2
 http://buildd.debian-ports.org/status/package.php?p=bowtie2&suite=sid

-----
make[1]: Entering directory
`/build/buildd-bowtie2_2.0.0-beta5-1-armel-_uybUi/bowtie2-2.0.0-beta5'
/usr/bin/g++ -O3 -m32 -msse2 -funroll-loops -g3
-DCOMPILER_OPTIONS="\"-O3 -m32 -msse2 -funroll-loops -g3 \""  \
		-fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat VERSION`\""
-DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\""
-DCOMPILER_VERSION="\"`/usr/bin/g++ -v 2>&1 | tail -1`\""
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE
-DBOWTIE_PTHREADS -DPREFETCH_LOCALITY=2 -DBOWTIE_MM  -DBOWTIE2
-DNDEBUG -Wall \
		 \
		-o bowtie2-build bt2_build.cpp \
		ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp
bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp
multikey_qsort.cpp diff_sample.cpp bowtie_build_main.cpp \
		
cc1plus: error: unrecognized command line option '-m32'
cc1plus: error: unrecognized command line option '-msse2'
cc1plus: error: unrecognized command line option '-m32'
cc1plus: error: unrecognized command line option '-msse2'
cc1plus: error: unrecognized command line option '-m32'
cc1plus: error: unrecognized command line option '-msse2'
cc1plus: error: unrecognized command line option '-m32'
cc1plus: error: unrecognized command line option '-msse2'
cc1plus: error: unrecognized command line option '-m32'
cc1plus: error: unrecognized command line option '-msse2'
cc1plus: error: unrecognized command line option '-m32'
cc1plus: error: unrecognized command line option '-msse2'
cc1plus: error: unrecognized command line option '-m32'
cc1plus: error: unrecognized command line option '-msse2'
cc1plus: error: unrecognized command line option '-m32'
cc1plus: error: unrecognized command line option '-msse2'
cc1plus: error: unrecognized command line option '-m32'
-----

Please check your package.

Best regards,
 Nobuhiro

--
Nobuhiro Iwamatsu
   iwamatsu at {nigauri.org / debian.org}
   GPG ID: 40AD1FA6