[Debian-med-packaging] Bug#668123: Bug#668123: bowtie2: FTBFS: cc1plus: error: unrecognized command line option '-m32'

[Alex Mestiashvili]

Hi Ben,

Do you think that bowtie2 can be fixed so it will work on architectures 
other than i386 and amd64 ?

here is the build status:
https://buildd.debian.org/status/package.php?p=bowtie2

Thank you,
Alex



On 04/09/2012 02:41 AM, Nobuhiro Iwamatsu wrote:
> Source: bowtie2
> Version: 2.0.0-beta5-1
> Severity: serious
> Justification: fails to build from source
>
> Hi,
>
> bowtie2 has failed in building by the architecture other than i386* and amd64*.
>
>   https://buildd.debian.org/status/package.php?p=bowtie2
>   http://buildd.debian-ports.org/status/package.php?p=bowtie2&suite=sid
>
> -----
> make[1]: Entering directory
> `/build/buildd-bowtie2_2.0.0-beta5-1-armel-_uybUi/bowtie2-2.0.0-beta5'
> /usr/bin/g++ -O3 -m32 -msse2 -funroll-loops -g3
> -DCOMPILER_OPTIONS="\"-O3 -m32 -msse2 -funroll-loops -g3 \""  \
> 		-fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat VERSION`\""
> -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\""
> -DCOMPILER_VERSION="\"`/usr/bin/g++ -v 2>&1 | tail -1`\""
> -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE
> -DBOWTIE_PTHREADS -DPREFETCH_LOCALITY=2 -DBOWTIE_MM  -DBOWTIE2
> -DNDEBUG -Wall \
> 		 \
> 		-o bowtie2-build bt2_build.cpp \
> 		ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp
> bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp
> multikey_qsort.cpp diff_sample.cpp bowtie_build_main.cpp \
> 		
> cc1plus: error: unrecognized command line option '-m32'
> cc1plus: error: unrecognized command line option '-msse2'
> cc1plus: error: unrecognized command line option '-m32'
> cc1plus: error: unrecognized command line option '-msse2'
> cc1plus: error: unrecognized command line option '-m32'
> cc1plus: error: unrecognized command line option '-msse2'
> cc1plus: error: unrecognized command line option '-m32'
> cc1plus: error: unrecognized command line option '-msse2'
> cc1plus: error: unrecognized command line option '-m32'
> cc1plus: error: unrecognized command line option '-msse2'
> cc1plus: error: unrecognized command line option '-m32'
> cc1plus: error: unrecognized command line option '-msse2'
> cc1plus: error: unrecognized command line option '-m32'
> cc1plus: error: unrecognized command line option '-msse2'
> cc1plus: error: unrecognized command line option '-m32'
> cc1plus: error: unrecognized command line option '-msse2'
> cc1plus: error: unrecognized command line option '-m32'
> -----
>
> Please check your package.
>
> Best regards,
>   Nobuhiro
>
> --
> Nobuhiro Iwamatsu
>     iwamatsu at {nigauri.org / debian.org}
>     GPG ID: 40AD1FA6
>
>
>
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