[Debian-med-packaging] Bug#675298: ugene: FTBFS in experimental: reverseInPlace' was not declared in this scope

[Samuel Thibault]

Package: ugene
Version: 1.9.8+repack-1
Severity: serious
Justification: FTBFS
Tags: experimental
User: debian-gcc at lists.debian.org
Usertags: ftbfs-gcc-4.7

Hello,

ugene currently FTBFS in experimental:

src/bowtie/alphabet.h:49:3: error: 'reverseInPlace' was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
src/bowtie/alphabet.h:75:20: note: 'template<class TStr> void reverseInPlace(TStr&)' declared here, later in the translation unit

See the full attached build log.  This is probably due to the gcc-4.7
switch.


Samuel

-- System Information:
Debian Release: wheezy/sid
  APT prefers testing
  APT policy: (990, 'testing'), (500, 'unstable'), (500, 'stable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 3.0.4 (SMP w/8 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash

-- 
Samuel Thibault <samuel.thibault at fnac.net>
<b> il faut combien de chevaux pour tirer une doloréan à 88 morph ?
***b vient de remarque que 88 mph c'est 142 km/h
<y> aaaaah
<y> c'est pour ça qu'ils limitent à 130 km/h sur les autoroutes
<y> c'est pour éviter que les gens voyagent dans le temps
<b> probablement
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