[Debian-med-packaging] Bug#675298: Bug#675298: ugene: FTBFS in experimental: reverseInPlace' was not declared in this scope

[Charles Plessy]

Le Thu, May 31, 2012 at 05:01:13AM +0200, Samuel Thibault a écrit :
> Package: ugene
> Version: 1.9.8+repack-1
> Severity: serious
> Justification: FTBFS
 
> src/bowtie/alphabet.h:49:3: error: 'reverseInPlace' was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
> src/bowtie/alphabet.h:75:20: note: 'template<class TStr> void reverseInPlace(TStr&)' declared here, later in the translation unit

Oops, a convenience code copy.

Dear Ivan, I see from your email address that you are related to ugene through
Unipro.  Do you think that Ugene could be modified so that it would use the
packaged version of Bowtie directly ?

Have a nice day,

-- 
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan