[Debian-med-packaging] Bug#705616: New upstream version bowtie 1.0.0

[Ognyan Kulev]

On Wed, Apr 17, 2013 at 09:47:39PM +0200, Andreas Tille wrote:
> > @@ -2,7 +2,7 @@
> >  # Makefile for bowtie, bowtie-build, bowtie-inspect
> >  #
> >  
> > -SEQAN_DIR = SeqAn-1.1
> > +SEQAN_DIR = /usr/include/seqan
> 
> Great to use packaged version.

I'm using my bowtie-1.0.0 package with Debian's SeqAn 1.3 and I don't have problems :-)

> From the other patches I did removed here in this mail it seems that you
> did not used pristine-tar as it is recommended in our policy[1] (or may
> be I misread the patch).  At least it is not usual to discuss upstream
> changes here except there is some relevant change for the packaging.

It looks like pristine-tar is used only for git packages and bowtie is in svn.

I've updated descriptions of patches and the result is committed in
http://anonscm.debian.org/viewvc/debian-med?view=revision&revision=13348
It's not finished yet and other things need polishing, in particular building 64-bit version.

Regards,
Ognyan Kulev