[Debian-med-packaging] Bug#697344: error: abyss has been compiled to use the POPCNT

[Andreas Tille]

Hi Ognyan,

thanks for your bug report.  Before I upload the package with the
requested option could you please test it whether the problem is solved.
I made my build available at

    http://people.debian.org/~tille/packages/abyss/

Please download the *.deb and install it manually via `dpkg -i *.deb`
and report here whether it works for you.

Kind regards

        Andreas.

On Fri, Jan 04, 2013 at 10:41:27AM +0200, Ognyan Kulev wrote:
> Package: abyss
> Version: 1.3.4-2
> Severity: grave
> 
> Trying to run abyss on Xeon E7340 leads to this error immediately after
> reading the fastq file:
> 
> error: abyss has been compiled to use the POPCNT
> instruction, which this machine lacks. Recompile using
> configure --disable-popcnt to disable this feature.
> 
> POPCNT instruction appeared along with SSE4.2.
> 
> Please configure abyss Debian package to work on all i686 processors by
> using --disable-popcnt.
> 
> Regards,
> Ognyan Kulev
> 
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