[Debian-med-packaging] Bug#742921: python-htseq: python.numpy dtype size error

Henry Amrhein hamrhein at caltech.edu
Sat Mar 29 00:00:28 UTC 2014


Package: python-htseq
Version: 0.5.4p3-2
Severity: normal

Here's a trace of the error message received when trying to import HTSeq:

Traceback (most recent call last):
   File 
"/usr/local/lib/R/site-library/DEXSeq/python_scripts/dexseq_prepare_annotation.py", 
line 33, in <module>
     import HTSeq
   File "/usr/lib/python2.7/dist-packages/HTSeq/__init__.py", line 9, in 
<module>
     from _HTSeq import *
   File "numpy.pxd", line 155, in init HTSeq._HTSeq (src/_HTSeq.c:33074)
ValueError: numpy.dtype has the wrong size, try recompiling


-- System Information:
Debian Release: 7.4
   APT prefers stable-updates
   APT policy: (500, 'stable-updates'), (500, 'testing'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 3.2.0-4-amd64 (SMP w/24 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages python-htseq depends on:
ii  libc6       2.18-4
ii  libgcc1     1:4.8.2-16
ii  libstdc++6  4.8.2-16
ii  python      2.7.5-5

python-htseq recommends no packages.

python-htseq suggests no packages.

-- no debconf information



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