[Debian-med-packaging] Bug#742921: python-htseq: python.numpy dtype size error

[Andreas Tille]

Hi Diane,

I have realised that there are some new versions of HTSeq out and may be
the problem will just be fixed by a new version?  Please drop a note here
to confirm that you are working on it or somebody else should step in.

Kind regards

       Andreas.

On Fri, Mar 28, 2014 at 05:00:28PM -0700, Henry Amrhein wrote:
> Package: python-htseq
> Version: 0.5.4p3-2
> Severity: normal
> 
> Here's a trace of the error message received when trying to import HTSeq:
> 
> Traceback (most recent call last):
>   File "/usr/local/lib/R/site-library/DEXSeq/python_scripts/dexseq_prepare_annotation.py",
> line 33, in <module>
>     import HTSeq
>   File "/usr/lib/python2.7/dist-packages/HTSeq/__init__.py", line 9,
> in <module>
>     from _HTSeq import *
>   File "numpy.pxd", line 155, in init HTSeq._HTSeq (src/_HTSeq.c:33074)
> ValueError: numpy.dtype has the wrong size, try recompiling
> 
> 
> -- System Information:
> Debian Release: 7.4
>   APT prefers stable-updates
>   APT policy: (500, 'stable-updates'), (500, 'testing'), (500, 'stable')
> Architecture: amd64 (x86_64)
> 
> Kernel: Linux 3.2.0-4-amd64 (SMP w/24 CPU cores)
> Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
> Shell: /bin/sh linked to /bin/dash
> 
> Versions of packages python-htseq depends on:
> ii  libc6       2.18-4
> ii  libgcc1     1:4.8.2-16
> ii  libstdc++6  4.8.2-16
> ii  python      2.7.5-5
> 
> python-htseq recommends no packages.
> 
> python-htseq suggests no packages.
> 
> -- no debconf information
> 
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