[Debian-med-packaging] r16579 - in trunk/packages: . libssj-java libssj-java/trunk

[Andreas Tille]

Hi Tim,

probably my problem is in a broken tool from devscripts (mk-origtar)
which I reported here:

    https://lists.alioth.debian.org/pipermail/devscripts-devel/2014-May/002302.html

If I do the unpackaging manually I get the same md5sums - so please
don't mind.  BTW, since the original tarball is to hard to obtain I'll
plan to move it to Git and since it is pure Java to pkg-java.  Just to
let you know.

Thanks for your preparation

       Andreas.

On Thu, May 15, 2014 at 10:56:26AM +0100, Tim Booth wrote:
> Hi Andreas,
> 
> Something ain't right here.  That file looks fine to me and compiles no
> problem.  Can you please verify:
> 
> $ md5sum *
> 4bc2cc682428f67aea1c926395fdf401  Blas_f77.java
> 3941fa74b17bb50f75b6e557451dd973  copyright
> 881cb44bf18be98f079874dfdc5e0379  disclaimer
> 2e38e7f7556684aed92f63a2f98da6fc  Fmin.java
> 87bd6a582be37c6bf1fc6d56c729253a  Fmin_methods.java
> 82bf52700a14eab259e26e18678bccac  Fzero.java
> b388678dbbc5f8412884b579f48f3c4c  Fzero_methods.java
> ab3247a148c2d6b40cb60321e0c060b4  Lmder_fcn.java
> 74710bf98a36767c05987b0d6545959c  Lmdif_fcn.java
> 9e8e09d5660ba2b280f8526ee29cddbe  Minpack_f77.java
> d60c7307cf5de16fcd445c586dbae594  README
> ddf7292820a6f338a572b1049205c383  Uncmin_f77.java
> 80561bf51217a4d8916c54b1561fa980  Uncmin_methods.java
> 
> $ wc Uncmin_f77.java
>   5886  21294 167200 Uncmin_f77.java
> 
> The file itself:
> http://nebc.nerc.ac.uk/dl/d.php/fb8d1aa848382f863a813a6cbc1922a7/Uncmin_f77.java
> 
> Cheers,
> 
> TIM
> 
> On Wed, 2014-05-14 at 20:44 +0100, Andreas Tille wrote:
> > Hi Tim,
> > 
> > On Wed, May 14, 2014 at 03:56:55PM +0100, Tim Booth wrote:
> > > Hi Andreas,
> > > 
> > > https://launchpad.net/~nebc/+archive/bio-linux/+files/liboptimization-java_0.1.orig.tar.xz
> > > 
> > > I'm pretty sure this is the untouched original .tar, just repacked with
> > > XZ by me.
> > 
> > I can confirm that the files are the same as I've got via ftp.
> > 
> > > It must be, as the files inside belong to steve:staff and I
> > > have no such user on my box.  Uncmin_f77 looks fine.
> > 
> > ...
> > jh_build optimization.jar optimization
> > find optimization -name *.java -and -type f -print0 | xargs -0 /usr/lib/jvm/default-java/bin/javac -cp :debian/_jh_build.optimization -d debian/_jh_build.optimization -source 1.5 -target 1.5
> > warning: [options] bootstrap class path not set in conjunction with -source 1.5
> > optimization/Uncmin_f77.java:5660: error: unclosed comment
> > /*
> > ^
> > optimization/Uncmin_f77.java:5796: error: reached end of file while parsing
> >     The Cons
> >             ^
> > 2 errors
> > 1 warning
> > debian/rules:14: recipe for target 'override_dh_auto_build' failed
> > 
> > 
> > And yes, the comment looks really suspicious since it is not clear when
> > it ends right after the original fortran documentation continuing with
> > Java code or whether the comment is longer.
> > 
> > > I can't get through to the FTP site at all now, so I can't retrieve any
> > > file from there corrupt or otherwise.
> > 
> > Wget took ages for me retrying several times but finally got the file.
> > 
> > Kind regards
> > 
> >        Andreas.
> > 
> 
> -- 
> Tim Booth <tbooth at ceh.ac.uk>
> NERC Environmental Bioinformatics Centre 
> 
> Centre for Ecology and Hydrology
> Maclean Bldg, Benson Lane
> Crowmarsh Gifford
> Wallingford, England
> OX10 8BB 
> 
> http://nebc.nerc.ac.uk
> +44 1491 69 2705
> 

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