[Debian-med-packaging] r16579 - in trunk/packages: . libssj-java libssj-java/trunk

[Tim Booth]

Hi Andreas,

Something ain't right here.  That file looks fine to me and compiles no
problem.  Can you please verify:

$ md5sum *
4bc2cc682428f67aea1c926395fdf401  Blas_f77.java
3941fa74b17bb50f75b6e557451dd973  copyright
881cb44bf18be98f079874dfdc5e0379  disclaimer
2e38e7f7556684aed92f63a2f98da6fc  Fmin.java
87bd6a582be37c6bf1fc6d56c729253a  Fmin_methods.java
82bf52700a14eab259e26e18678bccac  Fzero.java
b388678dbbc5f8412884b579f48f3c4c  Fzero_methods.java
ab3247a148c2d6b40cb60321e0c060b4  Lmder_fcn.java
74710bf98a36767c05987b0d6545959c  Lmdif_fcn.java
9e8e09d5660ba2b280f8526ee29cddbe  Minpack_f77.java
d60c7307cf5de16fcd445c586dbae594  README
ddf7292820a6f338a572b1049205c383  Uncmin_f77.java
80561bf51217a4d8916c54b1561fa980  Uncmin_methods.java

$ wc Uncmin_f77.java
  5886  21294 167200 Uncmin_f77.java

The file itself:
http://nebc.nerc.ac.uk/dl/d.php/fb8d1aa848382f863a813a6cbc1922a7/Uncmin_f77.java

Cheers,

TIM

On Wed, 2014-05-14 at 20:44 +0100, Andreas Tille wrote:
> Hi Tim,
> 
> On Wed, May 14, 2014 at 03:56:55PM +0100, Tim Booth wrote:
> > Hi Andreas,
> > 
> > https://launchpad.net/~nebc/+archive/bio-linux/+files/liboptimization-java_0.1.orig.tar.xz
> > 
> > I'm pretty sure this is the untouched original .tar, just repacked with
> > XZ by me.
> 
> I can confirm that the files are the same as I've got via ftp.
> 
> > It must be, as the files inside belong to steve:staff and I
> > have no such user on my box.  Uncmin_f77 looks fine.
> 
> ...
> jh_build optimization.jar optimization
> find optimization -name *.java -and -type f -print0 | xargs -0 /usr/lib/jvm/default-java/bin/javac -cp :debian/_jh_build.optimization -d debian/_jh_build.optimization -source 1.5 -target 1.5
> warning: [options] bootstrap class path not set in conjunction with -source 1.5
> optimization/Uncmin_f77.java:5660: error: unclosed comment
> /*
> ^
> optimization/Uncmin_f77.java:5796: error: reached end of file while parsing
>     The Cons
>             ^
> 2 errors
> 1 warning
> debian/rules:14: recipe for target 'override_dh_auto_build' failed
> 
> 
> And yes, the comment looks really suspicious since it is not clear when
> it ends right after the original fortran documentation continuing with
> Java code or whether the comment is longer.
> 
> > I can't get through to the FTP site at all now, so I can't retrieve any
> > file from there corrupt or otherwise.
> 
> Wget took ages for me retrying several times but finally got the file.
> 
> Kind regards
> 
>        Andreas.
> 

-- 
Tim Booth <tbooth at ceh.ac.uk>
NERC Environmental Bioinformatics Centre 

Centre for Ecology and Hydrology
Maclean Bldg, Benson Lane
Crowmarsh Gifford
Wallingford, England
OX10 8BB 

http://nebc.nerc.ac.uk
+44 1491 69 2705