[Debian-med-packaging] Testsuite fails when trying to build Debian packages from python-biom-format

[Daniel McDonald]

Those warnings are coming from our Cython code, so I think we'd need to
defer to the Cython maintainers. I suspect that other packages using Cython
and numpy 1.8 together get similar messages, though I could be wrong.

We will be supporting Python >= 3.3 moving forward but we were not able to
complete that during this cycle. I did a quick check and most of the issues
surround the zip/izip and StringIO use, which are quick to knock out using
future <https://pypi.python.org/pypi/future>. I'd like to say we'll shoot
for 2.1, but that may be off a little bit.

Thank you for the work on this, Andreas!

Best,
Daniel


On Thu, May 22, 2014 at 2:38 AM, Andreas Tille <tille at debian.org> wrote:

> Hi Daniel,
>
> On Wed, May 21, 2014 at 02:27:35PM -0600, Daniel McDonald wrote:
> > Ah, that is embarrassing... I'll put a fix on that. The specific
> > requirement can be found here:
> >
> > https://github.com/biocore/biom-format/blob/master/setup.py#L90
> >
> > Sorry about that
>
> No problem - this just happens.  Tests are working now - thanks for
> your help.
>
> Another thing you might be interested in that I get some
>
> /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
> warning: #warning "Using deprecated NumPy API, disable it by " "#defining
> NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wc
>  #warning "Using deprecated NumPy API, disable it by "
>
> warnings when building.  Please let me know whether you would need the
> full build log.
>
> Another question:  Do you intend to support Python3 as well?
>
> Kind regards
>
>       Andreas.
>
> --
> http://fam-tille.de
>
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