[Debian-med-packaging] uscan not downloading new upstream version of bowtie2

[Andreas Tille]

Hi Alex,

since you provided some tests in Git I was able to run these tests
successfully and thus I simply uploaded this new version.

Perhaps this saves you some time which you might like to spent into the
latest version of gmap (you dropped a note that the test does not run on
i386 in d/changelog).  I injected the last upstream version into Git
but will not upload.

Kind regards

        Andreas.

On Sun, Oct 26, 2014 at 07:18:23AM +0100, Andreas Tille wrote:
> Hi Alex,
> 
> thanks for noticing!
> 
> On Sat, Oct 25, 2014 at 11:38:11PM +0200, Alex Mestiashvili wrote:
> > Hi All,
> > 
> > I am facing a strange issue with uscan.
> > 
> > here is the output:
> > ~/debian-med/bowtie2$ uscan --verbose
> > -- Scanning for watchfiles in .
> > -- Found watchfile in ./debian
> > -- In debian/watch, processing watchfile line:
> >    opts=filenamemangle=s/(.*)(-source)(\..*$)/$1$3/
> > http://sf.net/bowtie-bio/bowtie2-([\d\.]+)\-source\.zip
> > -- Found the following matching hrefs:
> >      /watch/sf.php/bowtie-bio/bowtie2-2.2.4-source.zip (2.2.4)
> > ...
> >      /watch/sf.php/bowtie-bio/bowtie2-2.0.1-source.zip (2.0.1)
> > Newest version on remote site is 2.2.4, local version is 2.2.3
> >  => Newer version available from
> >     https://qa.debian.org/watch/sf.php/bowtie-bio/bowtie2-2.2.4-source.zip
> > -- Downloading updated package /watch/sf.php/bowtie-bio/bowtie2-2.2.4.zip
> > -- Checking for common possible upstream OpenPGP signatures
> > Could not read
> > ../tarballs//watch/sf.php/bowtie-bio/bowtie2-2.2.4.zip: No such file
> > or directory at /usr/bin/mk-origtargz line 316.
> > uscan: error: mk-origtargz --package bowtie2 --version 2.2.4
> > --compression gzip --directory ../tarballs --copyright-file
> > debian/copyright
> > ../tarballs//watch/sf.php/bowtie-bio/bowtie2-2.2.4.zip gave error
> > exit status 2
> > 
> > the problem as far as I see is that the file is not downloaded.
> 
> Same here.
> 
> > If i try to get it with wget then I see a number of redirects before
> > the download:
> > 
> > wget https://qa.debian.org/watch/sf.php/bowtie-bio/bowtie2-2.2.4-source.zip
> > --2014-10-25 23:33:35-- https://qa.debian.org/watch/sf.php/bowtie-bio/bowtie2-2.2.4-source.zip
> > Resolving qa.debian.org (qa.debian.org)... 5.153.231.28,
> > 2001:41c8:1000:21::21:28
> > ...
> > Connecting to skylink.dl.sourceforge.net
> > (skylink.dl.sourceforge.net)|109.230.212.53|:80... connected.
> > HTTP request sent, awaiting response... 200 OK
> > Length: 5725498 (5.5M) [application/octet-stream]
> > Saving to: ‘bowtie2-2.2.4-source.zip’
> > ...
> > 
> > here is the d/watch:
> > 
> >  http://anonscm.debian.org/cgit/debian-med/bowtie2.git/tree/debian/watch
> > 
> > Any hint ?
> 
> I do not think that this is an issue of our watch file but rather a problem of
> uscan.  I downloaded bowtie2 via wget and used
> 
>    mk-origtargz --repack --compress xz /home/andreas/Downloads/bowtie2-2.2.4-source.zip
> 
> to create the tarball which I importet into our repository. Please git pull
> check the result and upload (or ping me if you might not manage today since
> this evening the upload window for Jessie will close today).
> 
> Kind regards
> 
>         Andreas.
> 
> -- 
> http://fam-tille.de
> 
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