[Debian-med-packaging] Bug#793514: Fwd: Staden authoren ??? [Re: Bug#793514: FTBFS: conflicting types for append_int]

Sascha Steinbiss ss34 at sanger.ac.uk
Fri Aug 7 14:26:11 UTC 2015


Dear James and Andrew,

I am writing to kindly bring the following Staden build issue to your
attention. The Debian automated build system is currently unable to
build the code from source due to multiple declarations of identically
named functions with different parameter and return types.
We were wondering if you could help out there -- many thanks in advance!

Best wishes
Sascha

-- Forwarded email below --

Date: Sat, 1 Aug 2015 07:28:32 +0200
From: Andreas Tille <andreas at fam-tille.de>
To: "Chris West (Faux)" <solo-debianbugs at goeswhere.com>,
793514 at bugs.debian.org, James Bonfield <jkb at sanger.ac.uk>
Cc: Tim Booth <tbooth at ceh.ac.uk>
Subject: Re: Bug#793514: FTBFS: conflicting types for append_int

Hi Staden developers,

as you can see in this Debian bug report the current staden release is
in conflict with the latest releases of staden-io-lib.  Both dafine the
same function but with different code (not only the header is
different).

Any help is welcome

    Andreas.

On Fri, Jul 24, 2015 at 07:14:29PM +0000, Chris West (Faux) wrote:
> Source: staden
> Version: 2.0.0+b10-1.1
> Severity: serious
> Tags: sid
> Justification: fails to build from source
> User: reproducible-builds at lists.alioth.debian.org
> Usertags: ftbfs
> 
> Dear Maintainer,
> 
> The package fails to build:
> 
> sam_index.c:321:14: error: conflicting types for ‘append_int’
>  static char *append_int(char *cp, int i) {
>               ^
> In file included from /usr/include/io_lib/scram.h:52:0,
>                  from sam_pileup.h:4,
>                  from sam_index.c:17:
> /usr/include/io_lib/bam.h:755:16: note: previous declaration of ‘append_int’ was here
>  unsigned char *append_int(unsigned char *cp, int32_t i);
>                 ^
> /staden-2.0.0+b10/./gap5/../global.mk:388: recipe for target 'sam_index.o' failed
> make[2]: *** [sam_index.o] Error 1
> make[2]: Leaving directory '/staden-2.0.0+b10/gap5'
> 
> 
> Full build log:
> https://reproducible.debian.net/rb-pkg/unstable/amd64/staden.html
> 
> -- System Information:
> Debian Release: stretch/sid
>   APT prefers unstable
>   APT policy: (500, 'unstable')
> Architecture: amd64 (x86_64)
> 
> Kernel: Linux 3.19.0-23-generic (SMP w/8 CPU cores)
> Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8)
> Shell: /bin/sh linked to /bin/dash
> Init: systemd (via /run/systemd/system)
> 
> _______________________________________________
> Debian-med-packaging mailing list
> Debian-med-packaging at lists.alioth.debian.org
> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging

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----- End forwarded message -----

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