[Debian-med-packaging] Bug#793514: Fwd: Staden authoren ??? [Re: Bug#793514: FTBFS: conflicting types for append_int]

[Andrew Whitwham]

Hi Sascha,

Thanks for letting us know.  I will take a look but it may be a few days 
before I can do anything about it.

Regards,

Andrew


On 07/08/15 15:26, Sascha Steinbiss wrote:
> Dear James and Andrew,
>
> I am writing to kindly bring the following Staden build issue to your
> attention. The Debian automated build system is currently unable to
> build the code from source due to multiple declarations of identically
> named functions with different parameter and return types.
> We were wondering if you could help out there -- many thanks in advance!
>
> Best wishes
> Sascha
>
> -- Forwarded email below --
>
> Date: Sat, 1 Aug 2015 07:28:32 +0200
> From: Andreas Tille <andreas at fam-tille.de>
> To: "Chris West (Faux)" <solo-debianbugs at goeswhere.com>,
> 793514 at bugs.debian.org, James Bonfield <jkb at sanger.ac.uk>
> Cc: Tim Booth <tbooth at ceh.ac.uk>
> Subject: Re: Bug#793514: FTBFS: conflicting types for append_int
>
> Hi Staden developers,
>
> as you can see in this Debian bug report the current staden release is
> in conflict with the latest releases of staden-io-lib.  Both dafine the
> same function but with different code (not only the header is
> different).
>
> Any help is welcome
>
>      Andreas.
>
> On Fri, Jul 24, 2015 at 07:14:29PM +0000, Chris West (Faux) wrote:
>> Source: staden
>> Version: 2.0.0+b10-1.1
>> Severity: serious
>> Tags: sid
>> Justification: fails to build from source
>> User: reproducible-builds at lists.alioth.debian.org
>> Usertags: ftbfs
>>
>> Dear Maintainer,
>>
>> The package fails to build:
>>
>> sam_index.c:321:14: error: conflicting types for ‘append_int’
>>   static char *append_int(char *cp, int i) {
>>                ^
>> In file included from /usr/include/io_lib/scram.h:52:0,
>>                   from sam_pileup.h:4,
>>                   from sam_index.c:17:
>> /usr/include/io_lib/bam.h:755:16: note: previous declaration of ‘append_int’ was here
>>   unsigned char *append_int(unsigned char *cp, int32_t i);
>>                  ^
>> /staden-2.0.0+b10/./gap5/../global.mk:388: recipe for target 'sam_index.o' failed
>> make[2]: *** [sam_index.o] Error 1
>> make[2]: Leaving directory '/staden-2.0.0+b10/gap5'
>>
>>
>> Full build log:
>> https://reproducible.debian.net/rb-pkg/unstable/amd64/staden.html
>>
>> -- System Information:
>> Debian Release: stretch/sid
>>    APT prefers unstable
>>    APT policy: (500, 'unstable')
>> Architecture: amd64 (x86_64)
>>
>> Kernel: Linux 3.19.0-23-generic (SMP w/8 CPU cores)
>> Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8)
>> Shell: /bin/sh linked to /bin/dash
>> Init: systemd (via /run/systemd/system)
>>
>> _______________________________________________
>> Debian-med-packaging mailing list
>> Debian-med-packaging at lists.alioth.debian.org
>> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging
>



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