[Debian-med-packaging] Bug#793514: Fwd: Staden authoren ??? [Re: Bug#793514: FTBFS: conflicting types for append_int]

[Sascha Steinbiss]

Hi Andrew,

many thanks for your quick reply and for your willingness to look into
the issue.

Best regards,
Sascha

On 07/08/2015 16:23, Andrew Whitwham wrote:
> Hi Sascha,
> 
> Thanks for letting us know.  I will take a look but it may be a few days
> before I can do anything about it.
> 
> Regards,
> 
> Andrew
> 
> 
> On 07/08/15 15:26, Sascha Steinbiss wrote:
>> Dear James and Andrew,
>>
>> I am writing to kindly bring the following Staden build issue to your
>> attention. The Debian automated build system is currently unable to
>> build the code from source due to multiple declarations of identically
>> named functions with different parameter and return types.
>> We were wondering if you could help out there -- many thanks in advance!
>>
>> Best wishes
>> Sascha
>>
>> -- Forwarded email below --
>>
>> Date: Sat, 1 Aug 2015 07:28:32 +0200
>> From: Andreas Tille <andreas at fam-tille.de>
>> To: "Chris West (Faux)" <solo-debianbugs at goeswhere.com>,
>> 793514 at bugs.debian.org, James Bonfield <jkb at sanger.ac.uk>
>> Cc: Tim Booth <tbooth at ceh.ac.uk>
>> Subject: Re: Bug#793514: FTBFS: conflicting types for append_int
>>
>> Hi Staden developers,
>>
>> as you can see in this Debian bug report the current staden release is
>> in conflict with the latest releases of staden-io-lib.  Both dafine the
>> same function but with different code (not only the header is
>> different).
>>
>> Any help is welcome
>>
>>      Andreas.
>>
>> On Fri, Jul 24, 2015 at 07:14:29PM +0000, Chris West (Faux) wrote:
>>> Source: staden
>>> Version: 2.0.0+b10-1.1
>>> Severity: serious
>>> Tags: sid
>>> Justification: fails to build from source
>>> User: reproducible-builds at lists.alioth.debian.org
>>> Usertags: ftbfs
>>>
>>> Dear Maintainer,
>>>
>>> The package fails to build:
>>>
>>> sam_index.c:321:14: error: conflicting types for ‘append_int’
>>>   static char *append_int(char *cp, int i) {
>>>                ^
>>> In file included from /usr/include/io_lib/scram.h:52:0,
>>>                   from sam_pileup.h:4,
>>>                   from sam_index.c:17:
>>> /usr/include/io_lib/bam.h:755:16: note: previous declaration of
>>> ‘append_int’ was here
>>>   unsigned char *append_int(unsigned char *cp, int32_t i);
>>>                  ^
>>> /staden-2.0.0+b10/./gap5/../global.mk:388: recipe for target
>>> 'sam_index.o' failed
>>> make[2]: *** [sam_index.o] Error 1
>>> make[2]: Leaving directory '/staden-2.0.0+b10/gap5'
>>>
>>>
>>> Full build log:
>>> https://reproducible.debian.net/rb-pkg/unstable/amd64/staden.html
>>>
>>> -- System Information:
>>> Debian Release: stretch/sid
>>>    APT prefers unstable
>>>    APT policy: (500, 'unstable')
>>> Architecture: amd64 (x86_64)
>>>
>>> Kernel: Linux 3.19.0-23-generic (SMP w/8 CPU cores)
>>> Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8)
>>> Shell: /bin/sh linked to /bin/dash
>>> Init: systemd (via /run/systemd/system)
>>>
>>> _______________________________________________
>>> Debian-med-packaging mailing list
>>> Debian-med-packaging at lists.alioth.debian.org
>>> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging
>>>
>>
> 

-- 
Dr Sascha Steinbiss
Senior Bioinformatician
Parasite Genomics
Wellcome Trust Sanger Institute
Genome Campus, Hinxton,
Cambridge, CB10 1SA, UK


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