[Debian-med-packaging] IQ-TREE version 1.3.11

[Bui Quang Minh]

Hi Andreas,

> On Dec 16, 2015, at 10:04 AM, Andreas Tille <andreas at an3as.eu> wrote:
> 
> Hi Minh
> 
> On Wed, Dec 16, 2015 at 12:35:16AM +0100, Bui Quang Minh wrote:
>> As discussed I now include the pll library into a subfolder, instead of the submodule. The code should be compilable after cloning. The manual pdf is also removed. I pushed everything into the github repository.
>> 
>> can you please check it out?
> 
> Hmmm, after checking out the pll folder it seems this is just a code
> copy of
> 
>    http://www.libpll.org/
> 
> If this is the case the correct way to deal with this is packaging
> libpll separately and link iq-tree against this library - at least
> in the long run.

please note that they look similar but indeed different. The pll code I included is not from the master pll branch, but from my branch (portable_pll; I am also a member of PLL team), which is not merged back into the master PLL yet. Thus if you package it separately now, I don’t really know if iqtree runs the same or not…

so the safe solution is still to keep it like this. I will let you know once we are able to merge, so that both PLL copies are compatible...

> 
> For the moment I can confirm that the current status in Git builds on a
> Debian system.  It would be nice if you tag it as new release.  I will
> try to package libpll as well and once it is done I'll come up with a
> suggestion to separate the code copy.

good to know

Thanks, Minh

> 
> Kind regards and thanks for your support
> 
>       Andreas.
> 
> -- 
> http://fam-tille.de

--
Bui Quang Minh
Center for Integrative Bioinformatics Vienna (CIBIV)
Campus Vienna Biocenter 5, VBC5, Ebene 1
A-1030 Vienna, Austria
Phone: ++43 1 4277 74326
Email: minh.bui (AT) univie.ac.at