[Debian-med-packaging] Providing Maven input files for picard-tools (Was: Hopefully final problems with maven rules)

[Vincent Danjean]

  Hi,

Le 26/11/2015 11:56, Andreas Tille a écrit :
> Hi Vincent,
> 
> I upgraded picard-tools in Git to the latest upstream version.  It seems
> we need to wait until libhtsjdk-java has passed new before we can
> proceed here.  Could you meanwhile have a look at the
> debian/pom-picard.xml file I fetched from Central Maven Repository.  I'm
> afraid that some split into different pom.xml for the single binary
> packages might be needed but at least I tried my best to give it a kick
> start.  It would be great to feed all our Debian Med packages with Maven
> support to simplify things when new packages using Maven as build system
> come up.

  I hope someone from the java team can look and answer. I'm not very
experimented with regards to java packaging and even less with maven.

  Regards,
    Vincent

> Kind regards
> 
>       Andreas.
> 
> [1] http://search.maven.org/#search|ga|1|picard
> 
> On Thu, Nov 26, 2015 at 09:18:40AM +0100, Emmanuel Bourg wrote:
>> Le 26/11/2015 08:53, Andreas Tille a écrit :
>>> BTW, is there any chance to provide a maven control file for libsam-java
>>> (and others).  IMHO, it would be better to fix those things at the source
>>> rather than in all packages using it.
>>
>> I agree this is an even better solution. You just have to:
>> - import the pom.xml files for samtools and picard in the
>> src:picard-tools package from Maven central (as debian/pom-samtools.xml
>> and debian/pom-picard.xml for example)
>> - add a build dependency on maven-repo-helper
>> - call mh_installjar and mh_installpom in debian/rules (this will
>> replace the override_dh_link target, the debian/libsam-java.install file
>> and the line installing the jar in debian/picard-tools.install)
>>
>> Emmanuel Bourg
>>
>>
> 


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