[Debian-med-packaging] Bug#803567: r-bioc-cummerbund: FTBFS: objects 'FilterRules', 'seqsplit', 'FilterMatrix', 'subsetByFilter' are not exported by 'namespace:IRanges'

[Chris Lamb]

Source: r-bioc-cummerbund
Version: 2.10.0-1
Severity: serious
Justification: fails to build from source
User: reproducible-builds at lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-builds at lists.alioth.debian.org

Dear Maintainer,

r-bioc-cummerbund fails to build from source in unstable/amd64:

  [..]

  * installing *source* package 'cummeRbund' ...
  ** R
  ** data
  ** inst
  ** preparing package for lazy loading
  Warning: replacing previous import by 'IRanges::FilterRules' when
  loading 'VariantAnnotation'
  Warning: replacing previous import by 'IRanges::FilterMatrix' when
  loading 'VariantAnnotation'
  Error : objects 'FilterRules', 'seqsplit', 'FilterMatrix',
  'subsetByFilter' are not exported by 'namespace:IRanges'
  Error : package 'Gviz' could not be loaded
  ERROR: lazy loading failed for package 'cummeRbund'
  * removing
  '/home/lamby/temp/cdt.20151031125953.K7Z1F3IZ2W/r-bioc-cummerbund-2.10.0/debian/r-bioc-cummerbund/usr/lib/R/site-library/cummeRbund'
  /usr/share/R/debian/r-cran.mk:98: recipe for target 'R_any_arch'
  failed
  make: *** [R_any_arch] Error 1

  [..]

The full build log is attached.


Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      lamby at debian.org / chris-lamb.co.uk
       `-
-------------- next part --------------
A non-text attachment was scrubbed...
Name: r-bioc-cummerbund.2.10.0-1.unstable.amd64.log.txt.gz
Type: application/gzip
Size: 1252 bytes
Desc: not available
URL: <http://lists.alioth.debian.org/pipermail/debian-med-packaging/attachments/20151031/a68c58a6/attachment.bin>