[Debian-med-packaging] Bug#803567: r-bioc-cummerbund: FTBFS: objects 'FilterRules', 'seqsplit', 'FilterMatrix', 'subsetByFilter' are not exported by 'namespace:IRanges'

[Andreas Tille]

See #803479

On Sat, Oct 31, 2015 at 01:09:09PM +0000, Chris Lamb wrote:
> Source: r-bioc-cummerbund
> Version: 2.10.0-1
> Severity: serious
> Justification: fails to build from source
> User: reproducible-builds at lists.alioth.debian.org
> Usertags: ftbfs
> X-Debbugs-Cc: reproducible-builds at lists.alioth.debian.org
> 
> Dear Maintainer,
> 
> r-bioc-cummerbund fails to build from source in unstable/amd64:
> 
>   [..]
> 
>   * installing *source* package 'cummeRbund' ...
>   ** R
>   ** data
>   ** inst
>   ** preparing package for lazy loading
>   Warning: replacing previous import by 'IRanges::FilterRules' when
>   loading 'VariantAnnotation'
>   Warning: replacing previous import by 'IRanges::FilterMatrix' when
>   loading 'VariantAnnotation'
>   Error : objects 'FilterRules', 'seqsplit', 'FilterMatrix',
>   'subsetByFilter' are not exported by 'namespace:IRanges'
>   Error : package 'Gviz' could not be loaded
>   ERROR: lazy loading failed for package 'cummeRbund'
>   * removing
>   '/home/lamby/temp/cdt.20151031125953.K7Z1F3IZ2W/r-bioc-cummerbund-2.10.0/debian/r-bioc-cummerbund/usr/lib/R/site-library/cummeRbund'
>   /usr/share/R/debian/r-cran.mk:98: recipe for target 'R_any_arch'
>   failed
>   make: *** [R_any_arch] Error 1
> 
>   [..]
> 
> The full build log is attached.
> 
> 
> Regards,
> 
> -- 
>       ,''`.
>      : :'  :     Chris Lamb
>      `. `'`      lamby at debian.org / chris-lamb.co.uk
>        `-


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