[Debian-med-packaging] BioPython unit tests: Samtools

[Peter Cock]

On Thu, Sep 24, 2015 at 1:37 AM, Saket Choudhary <saketkc at gmail.com> wrote:
> On 23 September 2015 at 07:01, Peter Cock <p.j.a.cock at googlemail.com> wrote:
>>
>> Hi Andreas,
>>
>> Can you confirm which version of samtools is being used?
>>
>> Many of the options changed from 0.1.19 to 1.3, and backward
>> compatibility wasn't always preserved,  so my guess is this is a
>> side effect.
>>
>> Saket - are you interested in updating your original samtools
>> wrappers?
>>
>
> Sure, I will try to send a PR later this week.
>

Thanks Saket!

Andreas - this will be a fairly substantial patch adding new
functionality, so I would suggest for the Debian package of
Biopython 1.65 you simply ignore test_samtools_tool .py
(e.g. rename to something like skip_test_samtools_tool.py
- anything not matching test_*.py would work, or even
delete it?)

Peter