[Debian-med-packaging] Bug#821135: imagej: Crash running imagej

[Sébastien Jodogne]

As a complement, you will find the full log attached to this post.

HTH,
Sébastien-

On Fri, Apr 15, 2016 at 10:27 PM, Sebastien Jodogne <s.jodogne at gmail.com>
wrote:

> Package: imagej
> Version: 1.50i+dfsg-1
> Severity: important
>
> Dear Maintainer,
>
> When I try and run the ImageJ package from Debian Sid, I currently get the
> following crash:
>
> >>>>>
> jodogne at unstable:~$ rm -rf .imagej
> jodogne at unstable:~$ imagej
> Open other images in this ImageJ panel as follows:
>    imagej -p 1 <image1> [<image2> ... <imageN>]
>
> #
> # A fatal error has been detected by the Java Runtime Environment:
> #
> #  SIGSEGV (0xb) at pc=0x00007fe91d03ba8a, pid=1262, tid=140639753193216
> #
> # JRE version: OpenJDK Runtime Environment (8.0_77-b01) (build
> 1.8.0_77-Debian-8u77-b03-3+b1-b1)
> # Java VM: OpenJDK 64-Bit Server VM (25.77-b1 mixed mode linux-amd64
> compressed oops)
> # Problematic frame:
> # C  [libatk-bridge-2.0.so.0+0x10a8a]
> #
> # Failed to write core dump. Core dumps have been disabled. To enable
> core dumping, try "ulimit -c unlimited" before starting Java again
> #
> # An error report file with more information is saved as:
> # /home/jodogne/hs_err_pid1262.log
> #
> # If you would like to submit a bug report, please visit:
> #   http://bugreport.java.com/bugreport/crash.jsp
> # The crash happened outside the Java Virtual Machine in native code.
> # See problematic frame for where to report the bug.
> #
> /usr/bin/imagej: line 427:  1262 Aborted
> /usr/lib/jvm/java-1.8.0-openjdk-amd64/bin/java -d64 -mx474m -cp
> /usr/share/java/ij.jar ij.ImageJ -ijpath /home/jodogne/.imagej -port1
> <<<<<
>
> This crash makes the imagej package totally unusable to me.
>
> I have removed and purged all the JRE and JDK packages before making a
> fresh installation of imagej, but the crash is still there.
>
> I thank you in advance for taking this problem into consideration!
>
> Regards,
> Sebastien-
>
>
>
> -- System Information:
> Debian Release: stretch/sid
>   APT prefers unstable
>   APT policy: (500, 'unstable')
> Architecture: amd64 (x86_64)
>
> Kernel: Linux 4.4.0-1-amd64 (SMP w/4 CPU cores)
> Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=locale: Cannot set
> LC_ALL to default locale: No such file or directory
> UTF-8)
> Shell: /bin/sh linked to /bin/dash
> Init: systemd (via /run/systemd/system)
>
> Versions of packages imagej depends on:
> ii  default-jre  2:1.8-57
>
> imagej recommends no packages.
>
> imagej suggests no packages.
>
> -- debconf information:
> perl: warning: Setting locale failed.
> perl: warning: Please check that your locale settings:
>         LANGUAGE = "en_US:en",
>         LC_ALL = (unset),
>         LC_TIME = "fr_BE.UTF-8",
>         LC_MONETARY = "fr_BE.UTF-8",
>         LC_ADDRESS = "fr_BE.UTF-8",
>         LC_TELEPHONE = "fr_BE.UTF-8",
>         LC_NAME = "fr_BE.UTF-8",
>         LC_MEASUREMENT = "fr_BE.UTF-8",
>         LC_IDENTIFICATION = "fr_BE.UTF-8",
>         LC_NUMERIC = "fr_BE.UTF-8",
>         LC_PAPER = "fr_BE.UTF-8",
>         LANG = "en_US.UTF-8"
>     are supported and installed on your system.
> perl: warning: Falling back to a fallback locale ("en_US.UTF-8").
> locale: Cannot set LC_ALL to default locale: No such file or directory
>



-- 
Sébastien Jodogne
Mail: s.jodogne at gmail.com
Web: http://www.sjodogne.be/
Twitter: https://twitter.com/sjodogne
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