[Debian-med-packaging] Bug#821135: Bug#821135: imagej: Crash running imagej

[Sebastien Jodogne]

Hello,

After further investigation, this crash only occurs when I invoke imagej 
through ssh (with the "-Y" flag).

If I run imagej within some window manager (e.g. XFCE), everything goes 
fine.

As a consequence, this looks more like a problem within openjdk.

Sébastien-


On 04/16/2016 09:55 AM, Sébastien Jodogne wrote:
> As a complement, you will find the full log attached to this post.
>
> HTH,
> Sébastien-
>
> On Fri, Apr 15, 2016 at 10:27 PM, Sebastien Jodogne <s.jodogne at gmail.com
> <mailto:s.jodogne at gmail.com>> wrote:
>
>     Package: imagej
>     Version: 1.50i+dfsg-1
>     Severity: important
>
>     Dear Maintainer,
>
>     When I try and run the ImageJ package from Debian Sid, I currently
>     get the following crash:
>
>      >>>>>
>     jodogne at unstable:~$ rm -rf .imagej
>     jodogne at unstable:~$ imagej
>     Open other images in this ImageJ panel as follows:
>         imagej -p 1 <image1> [<image2> ... <imageN>]
>
>     #
>     # A fatal error has been detected by the Java Runtime Environment:
>     #
>     #  SIGSEGV (0xb) at pc=0x00007fe91d03ba8a, pid=1262, tid=140639753193216
>     #
>     # JRE version: OpenJDK Runtime Environment (8.0_77-b01) (build
>     1.8.0_77-Debian-8u77-b03-3+b1-b1)
>     # Java VM: OpenJDK 64-Bit Server VM (25.77-b1 mixed mode linux-amd64
>     compressed oops)
>     # Problematic frame:
>     # C  [libatk-bridge-2.0.so.0+0x10a8a]
>     #
>     # Failed to write core dump. Core dumps have been disabled. To enable
>     core dumping, try "ulimit -c unlimited" before starting Java again
>     #
>     # An error report file with more information is saved as:
>     # /home/jodogne/hs_err_pid1262.log
>     #
>     # If you would like to submit a bug report, please visit:
>     # http://bugreport.java.com/bugreport/crash.jsp
>     # The crash happened outside the Java Virtual Machine in native code.
>     # See problematic frame for where to report the bug.
>     #
>     /usr/bin/imagej: line 427:  1262 Aborted
>     /usr/lib/jvm/java-1.8.0-openjdk-amd64/bin/java -d64 -mx474m -cp
>     /usr/share/java/ij.jar ij.ImageJ -ijpath /home/jodogne/.imagej -port1
>     <<<<<
>
>     This crash makes the imagej package totally unusable to me.
>
>     I have removed and purged all the JRE and JDK packages before making
>     a fresh installation of imagej, but the crash is still there.
>
>     I thank you in advance for taking this problem into consideration!