[Debian-med-packaging] Problems with openssl when upgrading r-bioc-rtracklayer

[James Cowgill]

Hi,

On 04/12/16 19:55, Andreas Tille wrote:
> I tried to upgrade r-bioc-rtracklayer[1] to the latest upstream version
> (see trunk in SVN) but the build failed with:
> 
> * installing *source* package 'rtracklayer' ...
> ./configure: line 1676: syntax error near unexpected token `OPENSSL,'
> ./configure: line 1676: `PKG_CHECK_MODULES(OPENSSL, openssl >= 1.0, OPENSSL="yes", OPENSSL="no")'
> ERROR: configuration failed for package 'rtracklayer'
> * removing '/build/r-bioc-rtracklayer-1.34.1/debian/r-bioc-rtracklayer/usr/lib/R/site-library/rtracklayer'
> dh_auto_install: R CMD INSTALL -l /build/r-bioc-rtracklayer-1.34.1/debian/r-bioc-rtracklayer/usr/lib/R/site-library --clean . --built-timestamp='Wed, 30 Nov 2016 22:37:27 +0100' returned ex
> 
> 
> This check results from
> 
> PKG_CHECK_MODULES(OPENSSL, [openssl >= 1.0], [OPENSSL="yes"], [OPENSSL="no"])
> 
> in configure.ac - I have no idea why this fails.  Any helpful hint?

Do you have pkg-config installed?

James

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